miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 3' -54.3 NC_002512.2 + 116991 0.66 0.977845
Target:  5'- gUC-CGCGACGCGGcgaccgacGAGAACgCCGGGc -3'
miRNA:   3'- aAGcGCGCUGUGCC--------CUUUUG-GGCUUu -5'
9033 3' -54.3 NC_002512.2 + 158693 0.66 0.966946
Target:  5'- --gGC-CGGgACGGGGAGguGCCCGAGGu -3'
miRNA:   3'- aagCGcGCUgUGCCCUUU--UGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 226464 0.67 0.960268
Target:  5'- -cCcCGCGAgGCGGGAGgaggccggGGCCCGGGc -3'
miRNA:   3'- aaGcGCGCUgUGCCCUU--------UUGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 151519 1.04 0.011821
Target:  5'- gUUCGCGCGACACGGGAAAACCCGAAAa -3'
miRNA:   3'- -AAGCGCGCUGUGCCCUUUUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 199794 0.66 0.975411
Target:  5'- aUCGCGgGACA-GGGAuguuuACCgCGggGg -3'
miRNA:   3'- aAGCGCgCUGUgCCCUuu---UGG-GCuuU- -5'
9033 3' -54.3 NC_002512.2 + 221275 0.66 0.975411
Target:  5'- -aCGCGgGGCGCguggagggGGGGGAGgCCGggGu -3'
miRNA:   3'- aaGCGCgCUGUG--------CCCUUUUgGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 186536 0.66 0.972788
Target:  5'- -cUGCGUG-CACGGGGccGAGCCCu--- -3'
miRNA:   3'- aaGCGCGCuGUGCCCU--UUUGGGcuuu -5'
9033 3' -54.3 NC_002512.2 + 101268 0.66 0.972788
Target:  5'- gUCGUggggaGCGuACACGGGcAGGuACCCGGAc -3'
miRNA:   3'- aAGCG-----CGC-UGUGCCC-UUU-UGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 98746 0.66 0.969968
Target:  5'- -aCGgGUGGCGCGGGuuGACgaagacgggcgCCGAGAa -3'
miRNA:   3'- aaGCgCGCUGUGCCCuuUUG-----------GGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 149219 0.66 0.966946
Target:  5'- gUCGcCGcCGcCGCGGGAccgacGGACCCGGc- -3'
miRNA:   3'- aAGC-GC-GCuGUGCCCU-----UUUGGGCUuu -5'
9033 3' -54.3 NC_002512.2 + 92030 0.66 0.969968
Target:  5'- --gGCGUGGgAgGGGAAGACgCGGGAg -3'
miRNA:   3'- aagCGCGCUgUgCCCUUUUGgGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 131992 0.66 0.969968
Target:  5'- gUCGCGUgggccgccccgGGCGcCGGGggGACCuCGGc- -3'
miRNA:   3'- aAGCGCG-----------CUGU-GCCCuuUUGG-GCUuu -5'
9033 3' -54.3 NC_002512.2 + 194908 0.66 0.977845
Target:  5'- -cCGCGgGACGCGaGGcccagccGGACCCGGu- -3'
miRNA:   3'- aaGCGCgCUGUGC-CCu------UUUGGGCUuu -5'
9033 3' -54.3 NC_002512.2 + 131034 0.66 0.969083
Target:  5'- -cCGCGCGuCACGucacguugaugacaGGcaGAAACCCGAGGa -3'
miRNA:   3'- aaGCGCGCuGUGC--------------CC--UUUUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 90958 0.66 0.976407
Target:  5'- --gGCGCGACgauccaccagauccuGCGGGA---CCCGAGc -3'
miRNA:   3'- aagCGCGCUG---------------UGCCCUuuuGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 228250 0.66 0.969968
Target:  5'- -aCGUGCcgGACGCGGGGGcgacuGACCgCGGAc -3'
miRNA:   3'- aaGCGCG--CUGUGCCCUU-----UUGG-GCUUu -5'
9033 3' -54.3 NC_002512.2 + 112736 0.66 0.96818
Target:  5'- gUUC-CGCGGCACGcGGAAGGcggagagccggccguCCCGGAc -3'
miRNA:   3'- -AAGcGCGCUGUGC-CCUUUU---------------GGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 155414 0.67 0.963714
Target:  5'- gUCGCucuGCGAC-CGGGAGuGCCCc--- -3'
miRNA:   3'- aAGCG---CGCUGuGCCCUUuUGGGcuuu -5'
9033 3' -54.3 NC_002512.2 + 224407 0.66 0.975411
Target:  5'- -aCGCGCGcCACGaGGuc--CCCGAGu -3'
miRNA:   3'- aaGCGCGCuGUGC-CCuuuuGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 142418 0.66 0.975411
Target:  5'- -aCGaacaGCGACACGGuGAcgcucguCCCGAGAu -3'
miRNA:   3'- aaGCg---CGCUGUGCC-CUuuu----GGGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.