miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 3' -54.3 NC_002512.2 + 228250 0.66 0.969968
Target:  5'- -aCGUGCcgGACGCGGGGGcgacuGACCgCGGAc -3'
miRNA:   3'- aaGCGCG--CUGUGCCCUU-----UUGG-GCUUu -5'
9033 3' -54.3 NC_002512.2 + 227950 0.7 0.858837
Target:  5'- --gGCGgGggaGCGCGGGGGAGCCgGAGAg -3'
miRNA:   3'- aagCGCgC---UGUGCCCUUUUGGgCUUU- -5'
9033 3' -54.3 NC_002512.2 + 227453 0.7 0.873754
Target:  5'- cUUCGCGCuGcCGgGGGAGAGgCCGggGg -3'
miRNA:   3'- -AAGCGCG-CuGUgCCCUUUUgGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 227305 0.66 0.969968
Target:  5'- --aGCGCcaGCAUGGGGGAgacgcgccggcGCCCGAGGa -3'
miRNA:   3'- aagCGCGc-UGUGCCCUUU-----------UGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 226464 0.67 0.960268
Target:  5'- -cCcCGCGAgGCGGGAGgaggccggGGCCCGGGc -3'
miRNA:   3'- aaGcGCGCUgUGCCCUU--------UUGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 226208 0.67 0.960268
Target:  5'- -gCGCGCGGC-CGGGccaucaccggGGAGCCgGAGc -3'
miRNA:   3'- aaGCGCGCUGuGCCC----------UUUUGGgCUUu -5'
9033 3' -54.3 NC_002512.2 + 224407 0.66 0.975411
Target:  5'- -aCGCGCGcCACGaGGuc--CCCGAGu -3'
miRNA:   3'- aaGCGCGCuGUGC-CCuuuuGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 221275 0.66 0.975411
Target:  5'- -aCGCGgGGCGCguggagggGGGGGAGgCCGggGu -3'
miRNA:   3'- aaGCGCgCUGUG--------CCCUUUUgGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 219822 0.71 0.800576
Target:  5'- --gGCGCGACAgggggucgguCGGGggGuccgGCCCGggGg -3'
miRNA:   3'- aagCGCGCUGU----------GCCCuuU----UGGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 219048 0.69 0.89712
Target:  5'- gUCGgcCGCGGCGCGGGGcuccccgcgggcuucGAGCUCGAc- -3'
miRNA:   3'- aAGC--GCGCUGUGCCCU---------------UUUGGGCUuu -5'
9033 3' -54.3 NC_002512.2 + 218970 0.67 0.960268
Target:  5'- gUCGC-CGGCugGGaGGuccGGCCCGggGu -3'
miRNA:   3'- aAGCGcGCUGugCC-CUu--UUGGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 218898 0.72 0.754271
Target:  5'- aUCGCGCGccACGCGGGGcgGCUCGu-- -3'
miRNA:   3'- aAGCGCGC--UGUGCCCUuuUGGGCuuu -5'
9033 3' -54.3 NC_002512.2 + 215141 0.71 0.800576
Target:  5'- -cCGCGCGACGgGGGAGGcgacgagcACCUGGc- -3'
miRNA:   3'- aaGCGCGCUGUgCCCUUU--------UGGGCUuu -5'
9033 3' -54.3 NC_002512.2 + 213842 0.75 0.624173
Target:  5'- --gGCGCGGCGCGGGGAGAagauCCCGc-- -3'
miRNA:   3'- aagCGCGCUGUGCCCUUUU----GGGCuuu -5'
9033 3' -54.3 NC_002512.2 + 212678 0.67 0.948597
Target:  5'- -aCGUGaGGCugGGGAAGACCaUGggGa -3'
miRNA:   3'- aaGCGCgCUGugCCCUUUUGG-GCuuU- -5'
9033 3' -54.3 NC_002512.2 + 204616 0.66 0.969968
Target:  5'- uUUCGCGCuACACgauGGGGAAucaCCGGGAu -3'
miRNA:   3'- -AAGCGCGcUGUG---CCCUUUug-GGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 203246 0.67 0.952714
Target:  5'- cUCGUGCG-CugGuGGAucACCCGGu- -3'
miRNA:   3'- aAGCGCGCuGugC-CCUuuUGGGCUuu -5'
9033 3' -54.3 NC_002512.2 + 200208 0.69 0.907208
Target:  5'- --aGCGCGACGagccCGaGGAgccgGAGCCCGAGGa -3'
miRNA:   3'- aagCGCGCUGU----GC-CCU----UUUGGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 199794 0.66 0.975411
Target:  5'- aUCGCGgGACA-GGGAuguuuACCgCGggGg -3'
miRNA:   3'- aAGCGCgCUGUgCCCUuu---UGG-GCuuU- -5'
9033 3' -54.3 NC_002512.2 + 199631 0.69 0.900972
Target:  5'- -cCGCGCGucCGCGGGG--ACCCGu-- -3'
miRNA:   3'- aaGCGCGCu-GUGCCCUuuUGGGCuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.