miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 5' -59 NC_002512.2 + 98100 0.72 0.603723
Target:  5'- gGUCuuGG--UCGCCUUCCCGccccgcuugccGGGGCg -3'
miRNA:   3'- gCAGggCCagAGCGGAAGGGC-----------UCUCG- -5'
9033 5' -59 NC_002512.2 + 98192 0.67 0.86868
Target:  5'- cCGUCCgaGGgauggcguUCUCGgggaCCUUCCCGAGcAGUc -3'
miRNA:   3'- -GCAGGg-CC--------AGAGC----GGAAGGGCUC-UCG- -5'
9033 5' -59 NC_002512.2 + 98284 0.66 0.888751
Target:  5'- gCGggCCGGgcgcuUCUCGCUgaaggacgucuUUCCCGAGGGg -3'
miRNA:   3'- -GCagGGCC-----AGAGCGG-----------AAGGGCUCUCg -5'
9033 5' -59 NC_002512.2 + 99605 0.69 0.736948
Target:  5'- aCGUCCCGGgccccgcgCUCGUCgcggucgucgCCCucgGAGGGCc -3'
miRNA:   3'- -GCAGGGCCa-------GAGCGGaa--------GGG---CUCUCG- -5'
9033 5' -59 NC_002512.2 + 100623 0.67 0.830752
Target:  5'- aGUCCCGGUCcccuaguccuggaUCGCCccgcgcagcagUCCCGcGAucGCg -3'
miRNA:   3'- gCAGGGCCAG-------------AGCGGa----------AGGGCuCU--CG- -5'
9033 5' -59 NC_002512.2 + 101300 0.69 0.753363
Target:  5'- aCGUCCCGGccUCUCGCagggucggccCCCGGaGGCc -3'
miRNA:   3'- -GCAGGGCC--AGAGCGgaa-------GGGCUcUCG- -5'
9033 5' -59 NC_002512.2 + 101689 0.7 0.6996
Target:  5'- cCGUcCCCGGUCcCGCCggcggCCCGcucGGCg -3'
miRNA:   3'- -GCA-GGGCCAGaGCGGaa---GGGCuc-UCG- -5'
9033 5' -59 NC_002512.2 + 103443 0.71 0.651838
Target:  5'- uCGUCCCGGUCcgagCGCgggUCCGAGGacGCg -3'
miRNA:   3'- -GCAGGGCCAGa---GCGgaaGGGCUCU--CG- -5'
9033 5' -59 NC_002512.2 + 103503 0.66 0.875564
Target:  5'- gGcCCCGGg--CGCUcUCCCGGGcGGCc -3'
miRNA:   3'- gCaGGGCCagaGCGGaAGGGCUC-UCG- -5'
9033 5' -59 NC_002512.2 + 103556 0.67 0.831538
Target:  5'- cCGUCCCGGacgcggcggcCUCGUCgUCCa-GGAGCa -3'
miRNA:   3'- -GCAGGGCCa---------GAGCGGaAGGgcUCUCG- -5'
9033 5' -59 NC_002512.2 + 105323 0.66 0.895046
Target:  5'- aCGUCCCGGgccuccucCUCGCCga--CGAG-GUa -3'
miRNA:   3'- -GCAGGGCCa-------GAGCGGaaggGCUCuCG- -5'
9033 5' -59 NC_002512.2 + 106340 0.66 0.895046
Target:  5'- --cCCCGG--UCGCUcgUCCCGcGAGCu -3'
miRNA:   3'- gcaGGGCCagAGCGGa-AGGGCuCUCG- -5'
9033 5' -59 NC_002512.2 + 107060 0.67 0.861608
Target:  5'- cCGUCgCGGccuccaUCUCGU--UCUCGGGGGCg -3'
miRNA:   3'- -GCAGgGCC------AGAGCGgaAGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 107063 0.68 0.820387
Target:  5'- aGUCCCGGUCgacgCGCUggacguaggggaCCCGccgccAGGGCc -3'
miRNA:   3'- gCAGGGCCAGa---GCGGaa----------GGGC-----UCUCG- -5'
9033 5' -59 NC_002512.2 + 108108 0.74 0.500442
Target:  5'- gCGUCCCcgccucggcGGUC-CGCggUCCCGAGAGg -3'
miRNA:   3'- -GCAGGG---------CCAGaGCGgaAGGGCUCUCg -5'
9033 5' -59 NC_002512.2 + 110466 0.67 0.831538
Target:  5'- gGUCCCcgcGGUCcaCGC--UCCCGAGcAGCg -3'
miRNA:   3'- gCAGGG---CCAGa-GCGgaAGGGCUC-UCG- -5'
9033 5' -59 NC_002512.2 + 115507 0.66 0.907023
Target:  5'- gGUCgCCGGUCUCcaggGCCgggUCCGAaccGGCu -3'
miRNA:   3'- gCAG-GGCCAGAG----CGGaa-GGGCUc--UCG- -5'
9033 5' -59 NC_002512.2 + 122766 0.66 0.875564
Target:  5'- cCGUCaccuaUCGGg-UCGUCUccCCCGAGGGCg -3'
miRNA:   3'- -GCAG-----GGCCagAGCGGAa-GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 122877 0.67 0.831538
Target:  5'- gCG-CCCGGcUCUCgGCCgacCCCGGcccGGGCg -3'
miRNA:   3'- -GCaGGGCC-AGAG-CGGaa-GGGCU---CUCG- -5'
9033 5' -59 NC_002512.2 + 123115 0.69 0.764138
Target:  5'- cCGUCCCGccgccGUCggcgGCCgUCCCGGGGGa -3'
miRNA:   3'- -GCAGGGC-----CAGag--CGGaAGGGCUCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.