miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 5' -59 NC_002512.2 + 45182 0.66 0.907023
Target:  5'- uCGUCCUcggaGGUCUCGaCCgggaCCGGcGGCg -3'
miRNA:   3'- -GCAGGG----CCAGAGC-GGaag-GGCUcUCG- -5'
9033 5' -59 NC_002512.2 + 45944 0.66 0.880933
Target:  5'- gCGUCCCGGgagcagaaccaGCCgagccgcugaagggUCCCGAG-GCa -3'
miRNA:   3'- -GCAGGGCCagag-------CGGa-------------AGGGCUCuCG- -5'
9033 5' -59 NC_002512.2 + 47587 0.68 0.790395
Target:  5'- uCGUCCCGGUC---CCUgacggCCaGGGAGCg -3'
miRNA:   3'- -GCAGGGCCAGagcGGAa----GGgCUCUCG- -5'
9033 5' -59 NC_002512.2 + 65410 0.7 0.712788
Target:  5'- aGUCCucguagcucggcgggCGGUCgUCGCCccCgCCGAGGGCg -3'
miRNA:   3'- gCAGG---------------GCCAG-AGCGGaaG-GGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 65827 0.69 0.736948
Target:  5'- aGgCCCGGaUCUCGCCg---CGAGAGUa -3'
miRNA:   3'- gCaGGGCC-AGAGCGGaaggGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 71272 0.7 0.727713
Target:  5'- cCGUCCaGGgC-CGCCaggaCCCGGGAGCg -3'
miRNA:   3'- -GCAGGgCCaGaGCGGaa--GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 74209 0.71 0.642216
Target:  5'- aCGUCCgUGGgCUCGCggUCCCGAcgcgGGGCg -3'
miRNA:   3'- -GCAGG-GCCaGAGCGgaAGGGCU----CUCG- -5'
9033 5' -59 NC_002512.2 + 76648 0.67 0.861608
Target:  5'- -cUCCCGG-CUCGCUUcuucUCCCGAcGAa- -3'
miRNA:   3'- gcAGGGCCaGAGCGGA----AGGGCU-CUcg -5'
9033 5' -59 NC_002512.2 + 79172 0.69 0.764138
Target:  5'- aGUCCaaCGGUCg-GCCg--CCGAGAGCc -3'
miRNA:   3'- gCAGG--GCCAGagCGGaagGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 79571 0.66 0.88811
Target:  5'- gCGUCcucgccgCCGGUCUCGCuccuccgccuCUUCgCGGGcGGCa -3'
miRNA:   3'- -GCAG-------GGCCAGAGCG----------GAAGgGCUC-UCG- -5'
9033 5' -59 NC_002512.2 + 80762 0.68 0.823604
Target:  5'- gGUCCCGGgggucCUCGCgg-CUCGAggagGAGCg -3'
miRNA:   3'- gCAGGGCCa----GAGCGgaaGGGCU----CUCG- -5'
9033 5' -59 NC_002512.2 + 84128 0.68 0.823604
Target:  5'- gCGUCUCGGUgagGuCCUcgUCCGAGAGCg -3'
miRNA:   3'- -GCAGGGCCAgagC-GGAa-GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 84855 0.67 0.846918
Target:  5'- cCGUCCCGGg--CGUUgcgcgCCCGGGcguAGCg -3'
miRNA:   3'- -GCAGGGCCagaGCGGaa---GGGCUC---UCG- -5'
9033 5' -59 NC_002512.2 + 88973 0.67 0.86868
Target:  5'- gCGUCUgGGUCUCcgGCUUcguggCCgGGGGGCc -3'
miRNA:   3'- -GCAGGgCCAGAG--CGGAa----GGgCUCUCG- -5'
9033 5' -59 NC_002512.2 + 90581 0.69 0.746103
Target:  5'- gGcCCCGGUCU--CCUUCCCccGGGGCg -3'
miRNA:   3'- gCaGGGCCAGAgcGGAAGGGc-UCUCG- -5'
9033 5' -59 NC_002512.2 + 91852 0.69 0.736948
Target:  5'- aGUCCCGG-CUCauGCC--CCCGAG-GCc -3'
miRNA:   3'- gCAGGGCCaGAG--CGGaaGGGCUCuCG- -5'
9033 5' -59 NC_002512.2 + 91991 0.69 0.736948
Target:  5'- gCGUCCgGGUCUC-CCgcgUCgCCGGcGGCg -3'
miRNA:   3'- -GCAGGgCCAGAGcGGa--AG-GGCUcUCG- -5'
9033 5' -59 NC_002512.2 + 93857 0.66 0.888751
Target:  5'- gGUCgCGGUCUC-CCUU-CCGAGGu- -3'
miRNA:   3'- gCAGgGCCAGAGcGGAAgGGCUCUcg -5'
9033 5' -59 NC_002512.2 + 96871 0.69 0.755168
Target:  5'- -uUCUCGaUCgcggCGCaCUUCCCGGGGGCc -3'
miRNA:   3'- gcAGGGCcAGa---GCG-GAAGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 98065 0.72 0.565524
Target:  5'- -cUCCCGG-CUCGUC-UCCCGGGAcGUg -3'
miRNA:   3'- gcAGGGCCaGAGCGGaAGGGCUCU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.