miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 5' -59 NC_002512.2 + 93857 0.66 0.888751
Target:  5'- gGUCgCGGUCUC-CCUU-CCGAGGu- -3'
miRNA:   3'- gCAGgGCCAGAGcGGAAgGGCUCUcg -5'
9033 5' -59 NC_002512.2 + 98284 0.66 0.888751
Target:  5'- gCGggCCGGgcgcuUCUCGCUgaaggacgucuUUCCCGAGGGg -3'
miRNA:   3'- -GCagGGCC-----AGAGCGG-----------AAGGGCUCUCg -5'
9033 5' -59 NC_002512.2 + 45944 0.66 0.880933
Target:  5'- gCGUCCCGGgagcagaaccaGCCgagccgcugaagggUCCCGAG-GCa -3'
miRNA:   3'- -GCAGGGCCagag-------CGGa-------------AGGGCUCuCG- -5'
9033 5' -59 NC_002512.2 + 79571 0.66 0.88811
Target:  5'- gCGUCcucgccgCCGGUCUCGCuccuccgccuCUUCgCGGGcGGCa -3'
miRNA:   3'- -GCAG-------GGCCAGAGCG----------GAAGgGCUC-UCG- -5'
9033 5' -59 NC_002512.2 + 106340 0.66 0.895046
Target:  5'- --cCCCGG--UCGCUcgUCCCGcGAGCu -3'
miRNA:   3'- gcaGGGCCagAGCGGa-AGGGCuCUCG- -5'
9033 5' -59 NC_002512.2 + 152656 0.66 0.901137
Target:  5'- cCG-CCCGGgcgcucgUUCGCC-UCCCGGucGCu -3'
miRNA:   3'- -GCaGGGCCa------GAGCGGaAGGGCUcuCG- -5'
9033 5' -59 NC_002512.2 + 3149 0.66 0.901137
Target:  5'- cCGgagCCCGGUCcCGCCgucgucgCCCGc-GGCc -3'
miRNA:   3'- -GCa--GGGCCAGaGCGGaa-----GGGCucUCG- -5'
9033 5' -59 NC_002512.2 + 45182 0.66 0.907023
Target:  5'- uCGUCCUcggaGGUCUCGaCCgggaCCGGcGGCg -3'
miRNA:   3'- -GCAGGG----CCAGAGC-GGaag-GGCUcUCG- -5'
9033 5' -59 NC_002512.2 + 84855 0.67 0.846918
Target:  5'- cCGUCCCGGg--CGUUgcgcgCCCGGGcguAGCg -3'
miRNA:   3'- -GCAGGGCCagaGCGGaa---GGGCUC---UCG- -5'
9033 5' -59 NC_002512.2 + 107060 0.67 0.861608
Target:  5'- cCGUCgCGGccuccaUCUCGU--UCUCGGGGGCg -3'
miRNA:   3'- -GCAGgGCC------AGAGCGgaAGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 5 0.67 0.867981
Target:  5'- cCGUCgugagggCCGGUC-CuCCUccCCCGGGGGCg -3'
miRNA:   3'- -GCAG-------GGCCAGaGcGGAa-GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 229409 0.67 0.867981
Target:  5'- cCGUCgugagggCCGGUC-CuCCUccCCCGGGGGCg -3'
miRNA:   3'- -GCAG-------GGCCAGaGcGGAa-GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 1844 0.67 0.86868
Target:  5'- cCGUCCgCGGgcgUCUCGCCgccgUCCGGucGCc -3'
miRNA:   3'- -GCAGG-GCC---AGAGCGGaa--GGGCUcuCG- -5'
9033 5' -59 NC_002512.2 + 43046 0.67 0.846165
Target:  5'- gGUCCUcggcgacgcgcagGGcCUCGCCgaggcaccggUCCCGGGGcGCg -3'
miRNA:   3'- gCAGGG-------------CCaGAGCGGa---------AGGGCUCU-CG- -5'
9033 5' -59 NC_002512.2 + 19471 0.67 0.839311
Target:  5'- -aUCCCGGacCUCGCCUcCCCGcc-GCg -3'
miRNA:   3'- gcAGGGCCa-GAGCGGAaGGGCucuCG- -5'
9033 5' -59 NC_002512.2 + 103556 0.67 0.831538
Target:  5'- cCGUCCCGGacgcggcggcCUCGUCgUCCa-GGAGCa -3'
miRNA:   3'- -GCAGGGCCa---------GAGCGGaAGGgcUCUCG- -5'
9033 5' -59 NC_002512.2 + 188862 0.67 0.831538
Target:  5'- aG-CCCGGcguucuaaUCUCaGCUc-CCCGAGAGCa -3'
miRNA:   3'- gCaGGGCC--------AGAG-CGGaaGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 133867 0.67 0.830752
Target:  5'- aCGUCCUGGggcggCUCgaggagcggcucgGCCggcggUCCCGGGcGCu -3'
miRNA:   3'- -GCAGGGCCa----GAG-------------CGGa----AGGGCUCuCG- -5'
9033 5' -59 NC_002512.2 + 100623 0.67 0.830752
Target:  5'- aGUCCCGGUCcccuaguccuggaUCGCCccgcgcagcagUCCCGcGAucGCg -3'
miRNA:   3'- gCAGGGCCAG-------------AGCGGa----------AGGGCuCU--CG- -5'
9033 5' -59 NC_002512.2 + 4141 0.67 0.86868
Target:  5'- uGUCCCGG-C-CGCgc-CCCGAcuGAGCg -3'
miRNA:   3'- gCAGGGCCaGaGCGgaaGGGCU--CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.