miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 5' -59 NC_002512.2 + 170561 0.7 0.687265
Target:  5'- gCGUCCaGGUCgcaguucuccuccgUCGCCgugUCCCGAcccgaguccgucGAGCa -3'
miRNA:   3'- -GCAGGgCCAG--------------AGCGGa--AGGGCU------------CUCG- -5'
9033 5' -59 NC_002512.2 + 3007 0.7 0.689167
Target:  5'- gGUCCCGGgccuucCUgGCC-UCCCGGGccucccuGGCg -3'
miRNA:   3'- gCAGGGCCa-----GAgCGGaAGGGCUC-------UCG- -5'
9033 5' -59 NC_002512.2 + 8040 0.7 0.690118
Target:  5'- gGUCCCGGUCccgaggCGCC--CCCGcGGGUc -3'
miRNA:   3'- gCAGGGCCAGa-----GCGGaaGGGCuCUCG- -5'
9033 5' -59 NC_002512.2 + 101689 0.7 0.6996
Target:  5'- cCGUcCCCGGUCcCGCCggcggCCCGcucGGCg -3'
miRNA:   3'- -GCA-GGGCCAGaGCGGaa---GGGCuc-UCG- -5'
9033 5' -59 NC_002512.2 + 126845 0.7 0.6996
Target:  5'- uCGUCgCGGUCgUCGCCgucguccucUUCCCGuccgggacuGGGGCu -3'
miRNA:   3'- -GCAGgGCCAG-AGCGG---------AAGGGC---------UCUCG- -5'
9033 5' -59 NC_002512.2 + 165056 0.7 0.6996
Target:  5'- gGUCgUCaGcCUCGUCUUCgCCGAGGGCa -3'
miRNA:   3'- gCAG-GGcCaGAGCGGAAG-GGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 208654 0.7 0.709031
Target:  5'- cCGcCCCcGUCUcCGCCccgggcggcgUCCCGGGGGCc -3'
miRNA:   3'- -GCaGGGcCAGA-GCGGa---------AGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 65410 0.7 0.712788
Target:  5'- aGUCCucguagcucggcgggCGGUCgUCGCCccCgCCGAGGGCg -3'
miRNA:   3'- gCAGG---------------GCCAG-AGCGGaaG-GGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 71272 0.7 0.727713
Target:  5'- cCGUCCaGGgC-CGCCaggaCCCGGGAGCg -3'
miRNA:   3'- -GCAGGgCCaGaGCGGaa--GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 195398 0.7 0.727713
Target:  5'- gGUCgaCCGGgagCUCGUCUUCUCGGGGacguGCa -3'
miRNA:   3'- gCAG--GGCCa--GAGCGGAAGGGCUCU----CG- -5'
9033 5' -59 NC_002512.2 + 91852 0.69 0.736948
Target:  5'- aGUCCCGG-CUCauGCC--CCCGAG-GCc -3'
miRNA:   3'- gCAGGGCCaGAG--CGGaaGGGCUCuCG- -5'
9033 5' -59 NC_002512.2 + 10210 0.69 0.736948
Target:  5'- uCGUCCuCGGgcggCgCGCCcagaUCCCGAcGGGCg -3'
miRNA:   3'- -GCAGG-GCCa---GaGCGGa---AGGGCU-CUCG- -5'
9033 5' -59 NC_002512.2 + 91991 0.69 0.736948
Target:  5'- gCGUCCgGGUCUC-CCgcgUCgCCGGcGGCg -3'
miRNA:   3'- -GCAGGgCCAGAGcGGa--AG-GGCUcUCG- -5'
9033 5' -59 NC_002512.2 + 99605 0.69 0.736948
Target:  5'- aCGUCCCGGgccccgcgCUCGUCgcggucgucgCCCucgGAGGGCc -3'
miRNA:   3'- -GCAGGGCCa-------GAGCGGaa--------GGG---CUCUCG- -5'
9033 5' -59 NC_002512.2 + 24513 0.69 0.736948
Target:  5'- -uUCCUGGgccugacCGCCUUCCCGGucagcGAGCg -3'
miRNA:   3'- gcAGGGCCaga----GCGGAAGGGCU-----CUCG- -5'
9033 5' -59 NC_002512.2 + 65827 0.69 0.736948
Target:  5'- aGgCCCGGaUCUCGCCg---CGAGAGUa -3'
miRNA:   3'- gCaGGGCC-AGAGCGGaaggGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 147872 0.69 0.746103
Target:  5'- cCGaCCCGGgcgacggCUCGCCgcgaccgccCCCGAGAcGCc -3'
miRNA:   3'- -GCaGGGCCa------GAGCGGaa-------GGGCUCU-CG- -5'
9033 5' -59 NC_002512.2 + 90581 0.69 0.746103
Target:  5'- gGcCCCGGUCU--CCUUCCCccGGGGCg -3'
miRNA:   3'- gCaGGGCCAGAgcGGAAGGGc-UCUCG- -5'
9033 5' -59 NC_002512.2 + 151082 0.69 0.747013
Target:  5'- gGUCUCGGUCcgCGCCggagacgugcacgugUCUCGGGGcGCg -3'
miRNA:   3'- gCAGGGCCAGa-GCGGa--------------AGGGCUCU-CG- -5'
9033 5' -59 NC_002512.2 + 101300 0.69 0.753363
Target:  5'- aCGUCCCGGccUCUCGCagggucggccCCCGGaGGCc -3'
miRNA:   3'- -GCAGGGCC--AGAGCGgaa-------GGGCUcUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.