miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 5' -59 NC_002512.2 + 151553 1.1 0.002364
Target:  5'- cCGUCCCGGUCUCGCCUUCCCGAGAGCc -3'
miRNA:   3'- -GCAGGGCCAGAGCGGAAGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 6805 0.8 0.226363
Target:  5'- cCGUCUCGGUCaacCGCCUUCuCCGAGcGGCu -3'
miRNA:   3'- -GCAGGGCCAGa--GCGGAAG-GGCUC-UCG- -5'
9033 5' -59 NC_002512.2 + 214268 0.75 0.422096
Target:  5'- aGUUCCGcUgUCGCCUggccuggCCCGAGGGCu -3'
miRNA:   3'- gCAGGGCcAgAGCGGAa------GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 11733 0.74 0.456042
Target:  5'- gGUCCCGGUCUCGaggaCguaUCCG-GAGCa -3'
miRNA:   3'- gCAGGGCCAGAGCg---Gaa-GGGCuCUCG- -5'
9033 5' -59 NC_002512.2 + 3898 0.74 0.473556
Target:  5'- gCGUCCCGGUCcccUUGCC--CCCGAGAc- -3'
miRNA:   3'- -GCAGGGCCAG---AGCGGaaGGGCUCUcg -5'
9033 5' -59 NC_002512.2 + 108108 0.74 0.500442
Target:  5'- gCGUCCCcgccucggcGGUC-CGCggUCCCGAGAGg -3'
miRNA:   3'- -GCAGGG---------CCAGaGCGgaAGGGCUCUCg -5'
9033 5' -59 NC_002512.2 + 35873 0.73 0.509554
Target:  5'- -cUCCCGGUCcaUCGCgUUCCCGAGc-- -3'
miRNA:   3'- gcAGGGCCAG--AGCGgAAGGGCUCucg -5'
9033 5' -59 NC_002512.2 + 26532 0.73 0.556063
Target:  5'- gCGgCCUGGUCggcaGCUcgCCCGAGGGCu -3'
miRNA:   3'- -GCaGGGCCAGag--CGGaaGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 208706 0.72 0.565524
Target:  5'- gGUaCCCGGggCUCGCCgaCCagauCGGGAGCg -3'
miRNA:   3'- gCA-GGGCCa-GAGCGGaaGG----GCUCUCG- -5'
9033 5' -59 NC_002512.2 + 98065 0.72 0.565524
Target:  5'- -cUCCCGG-CUCGUC-UCCCGGGAcGUg -3'
miRNA:   3'- gcAGGGCCaGAGCGGaAGGGCUCU-CG- -5'
9033 5' -59 NC_002512.2 + 2670 0.72 0.575025
Target:  5'- -cUCCCGGUC-CGCCgccUCCugguccgcgcgCGGGAGCg -3'
miRNA:   3'- gcAGGGCCAGaGCGGa--AGG-----------GCUCUCG- -5'
9033 5' -59 NC_002512.2 + 165801 0.72 0.59413
Target:  5'- aCGUCUgGGUCUacaCCUUCCCGuccGAGUa -3'
miRNA:   3'- -GCAGGgCCAGAgc-GGAAGGGCu--CUCG- -5'
9033 5' -59 NC_002512.2 + 98100 0.72 0.603723
Target:  5'- gGUCuuGG--UCGCCUUCCCGccccgcuugccGGGGCg -3'
miRNA:   3'- gCAGggCCagAGCGGAAGGGC-----------UCUCG- -5'
9033 5' -59 NC_002512.2 + 3785 0.71 0.622957
Target:  5'- --aCCCGGagUCGgaCCggagcagUCCCGAGAGCg -3'
miRNA:   3'- gcaGGGCCagAGC--GGa------AGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 24977 0.71 0.631623
Target:  5'- cCGUCCCcgucacccgaccaGGaccgCUCGCCgu-CCGAGAGCu -3'
miRNA:   3'- -GCAGGG-------------CCa---GAGCGGaagGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 74209 0.71 0.642216
Target:  5'- aCGUCCgUGGgCUCGCggUCCCGAcgcgGGGCg -3'
miRNA:   3'- -GCAGG-GCCaGAGCGgaAGGGCU----CUCG- -5'
9033 5' -59 NC_002512.2 + 184939 0.71 0.651838
Target:  5'- uGUUCgGaGUC-CGCCUggCUCGAGAGCa -3'
miRNA:   3'- gCAGGgC-CAGaGCGGAa-GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 103443 0.71 0.651838
Target:  5'- uCGUCCCGGUCcgagCGCgggUCCGAGGacGCg -3'
miRNA:   3'- -GCAGGGCCAGa---GCGgaaGGGCUCU--CG- -5'
9033 5' -59 NC_002512.2 + 182784 0.71 0.660487
Target:  5'- gCGUCCgGagcGUCUgCGCgUucgucagUCCCGAGAGCg -3'
miRNA:   3'- -GCAGGgC---CAGA-GCGgA-------AGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 40808 0.71 0.661447
Target:  5'- aCGUCgCGGagaCUCGCCg--UCGAGAGCg -3'
miRNA:   3'- -GCAGgGCCa--GAGCGGaagGGCUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.