miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 5' -59 NC_002512.2 + 47587 0.68 0.790395
Target:  5'- uCGUCCCGGUC---CCUgacggCCaGGGAGCg -3'
miRNA:   3'- -GCAGGGCCAGagcGGAa----GGgCUCUCG- -5'
9033 5' -59 NC_002512.2 + 71272 0.7 0.727713
Target:  5'- cCGUCCaGGgC-CGCCaggaCCCGGGAGCg -3'
miRNA:   3'- -GCAGGgCCaGaGCGGaa--GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 24513 0.69 0.736948
Target:  5'- -uUCCUGGgccugacCGCCUUCCCGGucagcGAGCg -3'
miRNA:   3'- gcAGGGCCaga----GCGGAAGGGCU-----CUCG- -5'
9033 5' -59 NC_002512.2 + 91991 0.69 0.736948
Target:  5'- gCGUCCgGGUCUC-CCgcgUCgCCGGcGGCg -3'
miRNA:   3'- -GCAGGgCCAGAGcGGa--AG-GGCUcUCG- -5'
9033 5' -59 NC_002512.2 + 10210 0.69 0.736948
Target:  5'- uCGUCCuCGGgcggCgCGCCcagaUCCCGAcGGGCg -3'
miRNA:   3'- -GCAGG-GCCa---GaGCGGa---AGGGCU-CUCG- -5'
9033 5' -59 NC_002512.2 + 65827 0.69 0.736948
Target:  5'- aGgCCCGGaUCUCGCCg---CGAGAGUa -3'
miRNA:   3'- gCaGGGCC-AGAGCGGaaggGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 79172 0.69 0.764138
Target:  5'- aGUCCaaCGGUCg-GCCg--CCGAGAGCc -3'
miRNA:   3'- gCAGG--GCCAGagCGGaagGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 123115 0.69 0.764138
Target:  5'- cCGUCCCGccgccGUCggcgGCCgUCCCGGGGGa -3'
miRNA:   3'- -GCAGGGC-----CAGag--CGGaAGGGCUCUCg -5'
9033 5' -59 NC_002512.2 + 132035 0.68 0.781759
Target:  5'- cCGUCUCGGUCgUCGCCUccgcuUCCCccGcGCc -3'
miRNA:   3'- -GCAGGGCCAG-AGCGGA-----AGGGcuCuCG- -5'
9033 5' -59 NC_002512.2 + 65410 0.7 0.712788
Target:  5'- aGUCCucguagcucggcgggCGGUCgUCGCCccCgCCGAGGGCg -3'
miRNA:   3'- gCAGG---------------GCCAG-AGCGGaaG-GGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 8040 0.7 0.690118
Target:  5'- gGUCCCGGUCccgaggCGCC--CCCGcGGGUc -3'
miRNA:   3'- gCAGGGCCAGa-----GCGGaaGGGCuCUCG- -5'
9033 5' -59 NC_002512.2 + 3007 0.7 0.689167
Target:  5'- gGUCCCGGgccuucCUgGCC-UCCCGGGccucccuGGCg -3'
miRNA:   3'- gCAGGGCCa-----GAgCGGaAGGGCUC-------UCG- -5'
9033 5' -59 NC_002512.2 + 35873 0.73 0.509554
Target:  5'- -cUCCCGGUCcaUCGCgUUCCCGAGc-- -3'
miRNA:   3'- gcAGGGCCAG--AGCGgAAGGGCUCucg -5'
9033 5' -59 NC_002512.2 + 26532 0.73 0.556063
Target:  5'- gCGgCCUGGUCggcaGCUcgCCCGAGGGCu -3'
miRNA:   3'- -GCaGGGCCAGag--CGGaaGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 98065 0.72 0.565524
Target:  5'- -cUCCCGG-CUCGUC-UCCCGGGAcGUg -3'
miRNA:   3'- gcAGGGCCaGAGCGGaAGGGCUCU-CG- -5'
9033 5' -59 NC_002512.2 + 2670 0.72 0.575025
Target:  5'- -cUCCCGGUC-CGCCgccUCCugguccgcgcgCGGGAGCg -3'
miRNA:   3'- gcAGGGCCAGaGCGGa--AGG-----------GCUCUCG- -5'
9033 5' -59 NC_002512.2 + 3785 0.71 0.622957
Target:  5'- --aCCCGGagUCGgaCCggagcagUCCCGAGAGCg -3'
miRNA:   3'- gcaGGGCCagAGC--GGa------AGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 24977 0.71 0.631623
Target:  5'- cCGUCCCcgucacccgaccaGGaccgCUCGCCgu-CCGAGAGCu -3'
miRNA:   3'- -GCAGGG-------------CCa---GAGCGGaagGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 74209 0.71 0.642216
Target:  5'- aCGUCCgUGGgCUCGCggUCCCGAcgcgGGGCg -3'
miRNA:   3'- -GCAGG-GCCaGAGCGgaAGGGCU----CUCG- -5'
9033 5' -59 NC_002512.2 + 40808 0.71 0.661447
Target:  5'- aCGUCgCGGagaCUCGCCg--UCGAGAGCg -3'
miRNA:   3'- -GCAGgGCCa--GAGCGGaagGGCUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.