miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 5' -59 NC_002512.2 + 226484 0.66 0.907023
Target:  5'- cCGgggCCCGGgcgcucccCUCGCCgcgggUCCUGcuGGCg -3'
miRNA:   3'- -GCa--GGGCCa-------GAGCGGa----AGGGCucUCG- -5'
9033 5' -59 NC_002512.2 + 215025 0.67 0.861608
Target:  5'- uGUCCCGcGacuacCUCuGCUgUCCCGAGgAGCu -3'
miRNA:   3'- gCAGGGC-Ca----GAG-CGGaAGGGCUC-UCG- -5'
9033 5' -59 NC_002512.2 + 186797 0.67 0.846918
Target:  5'- cCGUCCCcGcugCUCGCCgcgcCCCGGGAc- -3'
miRNA:   3'- -GCAGGGcCa--GAGCGGaa--GGGCUCUcg -5'
9033 5' -59 NC_002512.2 + 151553 1.1 0.002364
Target:  5'- cCGUCCCGGUCUCGCCUUCCCGAGAGCc -3'
miRNA:   3'- -GCAGGGCCAGAGCGGAAGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 147664 0.66 0.907023
Target:  5'- cCGUCaCCGGcCcCGCUUcccgcCCCGGGAGg -3'
miRNA:   3'- -GCAG-GGCCaGaGCGGAa----GGGCUCUCg -5'
9033 5' -59 NC_002512.2 + 223132 0.66 0.907023
Target:  5'- aGUCC--GUCaUCGUCUUCCCGAuccAGCg -3'
miRNA:   3'- gCAGGgcCAG-AGCGGAAGGGCUc--UCG- -5'
9033 5' -59 NC_002512.2 + 213523 0.66 0.895046
Target:  5'- uCGUCCgGGUCggggUGCC--CUCG-GAGCg -3'
miRNA:   3'- -GCAGGgCCAGa---GCGGaaGGGCuCUCG- -5'
9033 5' -59 NC_002512.2 + 105323 0.66 0.895046
Target:  5'- aCGUCCCGGgccuccucCUCGCCga--CGAG-GUa -3'
miRNA:   3'- -GCAGGGCCa-------GAGCGGaaggGCUCuCG- -5'
9033 5' -59 NC_002512.2 + 131798 0.67 0.86868
Target:  5'- cCGUCCCcGUCaucCGCUcggacacgUCCCGGGAGa -3'
miRNA:   3'- -GCAGGGcCAGa--GCGGa-------AGGGCUCUCg -5'
9033 5' -59 NC_002512.2 + 153236 0.67 0.861608
Target:  5'- cCGUCCCGGgCUC-CCUggcaaaCCCGAu-GCg -3'
miRNA:   3'- -GCAGGGCCaGAGcGGAa-----GGGCUcuCG- -5'
9033 5' -59 NC_002512.2 + 194956 0.67 0.864459
Target:  5'- cCGUCgccgcgaccccgccgUCGGUCUCGUCcUCCUcucggcgcaaGAGGGCg -3'
miRNA:   3'- -GCAG---------------GGCCAGAGCGGaAGGG----------CUCUCG- -5'
9033 5' -59 NC_002512.2 + 152689 0.66 0.875565
Target:  5'- gCGg-CCGGUCUCGUCgcgUCCCcggucGGGGUg -3'
miRNA:   3'- -GCagGGCCAGAGCGGa--AGGGc----UCUCG- -5'
9033 5' -59 NC_002512.2 + 147276 0.66 0.907023
Target:  5'- cCGaCCCGGga-CGCCgcgcgucgUUCCCGGGGGg -3'
miRNA:   3'- -GCaGGGCCagaGCGG--------AAGGGCUCUCg -5'
9033 5' -59 NC_002512.2 + 76648 0.67 0.861608
Target:  5'- -cUCCCGG-CUCGCUUcuucUCCCGAcGAa- -3'
miRNA:   3'- gcAGGGCCaGAGCGGA----AGGGCU-CUcg -5'
9033 5' -59 NC_002512.2 + 222967 0.66 0.907023
Target:  5'- gCGUCgugcacuacgcgCCGGUCuuccUCGaCCUgCCgGGGAGCg -3'
miRNA:   3'- -GCAG------------GGCCAG----AGC-GGAaGGgCUCUCG- -5'
9033 5' -59 NC_002512.2 + 128100 0.66 0.888751
Target:  5'- cCGaCCCGGgcCUCcuCC-UCCCGAGGGUu -3'
miRNA:   3'- -GCaGGGCCa-GAGc-GGaAGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 182655 0.67 0.861608
Target:  5'- gCGUCUCGGcCUCGCCgaacUCCUu-GAuGCg -3'
miRNA:   3'- -GCAGGGCCaGAGCGGa---AGGGcuCU-CG- -5'
9033 5' -59 NC_002512.2 + 151007 0.67 0.86089
Target:  5'- gGUCUCGGUCUCcauggcgacgcgaGCCacCUCGAG-GCg -3'
miRNA:   3'- gCAGGGCCAGAG-------------CGGaaGGGCUCuCG- -5'
9033 5' -59 NC_002512.2 + 167581 0.66 0.907023
Target:  5'- -uUCCCGGUCauccgcCGCCUcugcgacgCCCGGGAc- -3'
miRNA:   3'- gcAGGGCCAGa-----GCGGAa-------GGGCUCUcg -5'
9033 5' -59 NC_002512.2 + 155158 0.66 0.901137
Target:  5'- gGUCgUCGGUCUCGCUcgCUCGcggcgucguGAGCu -3'
miRNA:   3'- gCAG-GGCCAGAGCGGaaGGGCu--------CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.