miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 5' -59 NC_002512.2 + 5 0.67 0.867981
Target:  5'- cCGUCgugagggCCGGUC-CuCCUccCCCGGGGGCg -3'
miRNA:   3'- -GCAG-------GGCCAGaGcGGAa-GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 1844 0.67 0.86868
Target:  5'- cCGUCCgCGGgcgUCUCGCCgccgUCCGGucGCc -3'
miRNA:   3'- -GCAGG-GCC---AGAGCGGaa--GGGCUcuCG- -5'
9033 5' -59 NC_002512.2 + 2670 0.72 0.575025
Target:  5'- -cUCCCGGUC-CGCCgccUCCugguccgcgcgCGGGAGCg -3'
miRNA:   3'- gcAGGGCCAGaGCGGa--AGG-----------GCUCUCG- -5'
9033 5' -59 NC_002512.2 + 3007 0.7 0.689167
Target:  5'- gGUCCCGGgccuucCUgGCC-UCCCGGGccucccuGGCg -3'
miRNA:   3'- gCAGGGCCa-----GAgCGGaAGGGCUC-------UCG- -5'
9033 5' -59 NC_002512.2 + 3149 0.66 0.901137
Target:  5'- cCGgagCCCGGUCcCGCCgucgucgCCCGc-GGCc -3'
miRNA:   3'- -GCa--GGGCCAGaGCGGaa-----GGGCucUCG- -5'
9033 5' -59 NC_002512.2 + 3785 0.71 0.622957
Target:  5'- --aCCCGGagUCGgaCCggagcagUCCCGAGAGCg -3'
miRNA:   3'- gcaGGGCCagAGC--GGa------AGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 3898 0.74 0.473556
Target:  5'- gCGUCCCGGUCcccUUGCC--CCCGAGAc- -3'
miRNA:   3'- -GCAGGGCCAG---AGCGGaaGGGCUCUcg -5'
9033 5' -59 NC_002512.2 + 4141 0.67 0.86868
Target:  5'- uGUCCCGG-C-CGCgc-CCCGAcuGAGCg -3'
miRNA:   3'- gCAGGGCCaGaGCGgaaGGGCU--CUCG- -5'
9033 5' -59 NC_002512.2 + 6805 0.8 0.226363
Target:  5'- cCGUCUCGGUCaacCGCCUUCuCCGAGcGGCu -3'
miRNA:   3'- -GCAGGGCCAGa--GCGGAAG-GGCUC-UCG- -5'
9033 5' -59 NC_002512.2 + 8040 0.7 0.690118
Target:  5'- gGUCCCGGUCccgaggCGCC--CCCGcGGGUc -3'
miRNA:   3'- gCAGGGCCAGa-----GCGGaaGGGCuCUCG- -5'
9033 5' -59 NC_002512.2 + 10210 0.69 0.736948
Target:  5'- uCGUCCuCGGgcggCgCGCCcagaUCCCGAcGGGCg -3'
miRNA:   3'- -GCAGG-GCCa---GaGCGGa---AGGGCU-CUCG- -5'
9033 5' -59 NC_002512.2 + 11733 0.74 0.456042
Target:  5'- gGUCCCGGUCUCGaggaCguaUCCG-GAGCa -3'
miRNA:   3'- gCAGGGCCAGAGCg---Gaa-GGGCuCUCG- -5'
9033 5' -59 NC_002512.2 + 19471 0.67 0.839311
Target:  5'- -aUCCCGGacCUCGCCUcCCCGcc-GCg -3'
miRNA:   3'- gcAGGGCCa-GAGCGGAaGGGCucuCG- -5'
9033 5' -59 NC_002512.2 + 24513 0.69 0.736948
Target:  5'- -uUCCUGGgccugacCGCCUUCCCGGucagcGAGCg -3'
miRNA:   3'- gcAGGGCCaga----GCGGAAGGGCU-----CUCG- -5'
9033 5' -59 NC_002512.2 + 24977 0.71 0.631623
Target:  5'- cCGUCCCcgucacccgaccaGGaccgCUCGCCgu-CCGAGAGCu -3'
miRNA:   3'- -GCAGGG-------------CCa---GAGCGGaagGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 26532 0.73 0.556063
Target:  5'- gCGgCCUGGUCggcaGCUcgCCCGAGGGCu -3'
miRNA:   3'- -GCaGGGCCAGag--CGGaaGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 35873 0.73 0.509554
Target:  5'- -cUCCCGGUCcaUCGCgUUCCCGAGc-- -3'
miRNA:   3'- gcAGGGCCAG--AGCGgAAGGGCUCucg -5'
9033 5' -59 NC_002512.2 + 39451 0.68 0.790395
Target:  5'- aCGUCCCGGUCggugacgGCCcgcUCCCGcAGcccccGGCg -3'
miRNA:   3'- -GCAGGGCCAGag-----CGGa--AGGGC-UC-----UCG- -5'
9033 5' -59 NC_002512.2 + 40808 0.71 0.661447
Target:  5'- aCGUCgCGGagaCUCGCCg--UCGAGAGCg -3'
miRNA:   3'- -GCAGgGCCa--GAGCGGaagGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 43046 0.67 0.846165
Target:  5'- gGUCCUcggcgacgcgcagGGcCUCGCCgaggcaccggUCCCGGGGcGCg -3'
miRNA:   3'- gCAGGG-------------CCaGAGCGGa---------AGGGCUCU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.