miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 5' -59 NC_002512.2 + 229409 0.67 0.867981
Target:  5'- cCGUCgugagggCCGGUC-CuCCUccCCCGGGGGCg -3'
miRNA:   3'- -GCAG-------GGCCAGaGcGGAa-GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 226484 0.66 0.907023
Target:  5'- cCGgggCCCGGgcgcucccCUCGCCgcgggUCCUGcuGGCg -3'
miRNA:   3'- -GCa--GGGCCa-------GAGCGGa----AGGGCucUCG- -5'
9033 5' -59 NC_002512.2 + 223132 0.66 0.907023
Target:  5'- aGUCC--GUCaUCGUCUUCCCGAuccAGCg -3'
miRNA:   3'- gCAGGgcCAG-AGCGGAAGGGCUc--UCG- -5'
9033 5' -59 NC_002512.2 + 222967 0.66 0.907023
Target:  5'- gCGUCgugcacuacgcgCCGGUCuuccUCGaCCUgCCgGGGAGCg -3'
miRNA:   3'- -GCAG------------GGCCAG----AGC-GGAaGGgCUCUCG- -5'
9033 5' -59 NC_002512.2 + 219591 0.67 0.831538
Target:  5'- aCGUCCUGGUggccgaCUCGCUg-CCCGGcuucucGGGCa -3'
miRNA:   3'- -GCAGGGCCA------GAGCGGaaGGGCU------CUCG- -5'
9033 5' -59 NC_002512.2 + 216207 0.69 0.764139
Target:  5'- cCG-CCgCGGcCgUCGCCUcgUCCGGGAGCu -3'
miRNA:   3'- -GCaGG-GCCaG-AGCGGAa-GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 215025 0.67 0.861608
Target:  5'- uGUCCCGcGacuacCUCuGCUgUCCCGAGgAGCu -3'
miRNA:   3'- gCAGGGC-Ca----GAG-CGGaAGGGCUC-UCG- -5'
9033 5' -59 NC_002512.2 + 214268 0.75 0.422096
Target:  5'- aGUUCCGcUgUCGCCUggccuggCCCGAGGGCu -3'
miRNA:   3'- gCAGGGCcAgAGCGGAa------GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 213703 0.67 0.834667
Target:  5'- aCGUCCCGGUCgauUCGUUUUUCCaaaauauaugucuGGGCa -3'
miRNA:   3'- -GCAGGGCCAG---AGCGGAAGGGcu-----------CUCG- -5'
9033 5' -59 NC_002512.2 + 213523 0.66 0.895046
Target:  5'- uCGUCCgGGUCggggUGCC--CUCG-GAGCg -3'
miRNA:   3'- -GCAGGgCCAGa---GCGGaaGGGCuCUCG- -5'
9033 5' -59 NC_002512.2 + 208706 0.72 0.565524
Target:  5'- gGUaCCCGGggCUCGCCgaCCagauCGGGAGCg -3'
miRNA:   3'- gCA-GGGCCa-GAGCGGaaGG----GCUCUCG- -5'
9033 5' -59 NC_002512.2 + 208654 0.7 0.709031
Target:  5'- cCGcCCCcGUCUcCGCCccgggcggcgUCCCGGGGGCc -3'
miRNA:   3'- -GCaGGGcCAGA-GCGGa---------AGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 204799 0.69 0.755168
Target:  5'- aCG-CCCGGgaggUC-CGCg-UCCCGGGGGCg -3'
miRNA:   3'- -GCaGGGCC----AGaGCGgaAGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 204458 0.68 0.823604
Target:  5'- aGUCCCgcguucgcccgGGUCUaCGCCcguaacgCCCuGGAGCg -3'
miRNA:   3'- gCAGGG-----------CCAGA-GCGGaa-----GGGcUCUCG- -5'
9033 5' -59 NC_002512.2 + 201810 0.68 0.781759
Target:  5'- -cUCuCCGccGUCUcCGCCgcgCCCGGGGGCu -3'
miRNA:   3'- gcAG-GGC--CAGA-GCGGaa-GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 195590 0.68 0.815516
Target:  5'- aGUCCUuGUC-CGUCUUUCaGAGAGCu -3'
miRNA:   3'- gCAGGGcCAGaGCGGAAGGgCUCUCG- -5'
9033 5' -59 NC_002512.2 + 195398 0.7 0.727713
Target:  5'- gGUCgaCCGGgagCUCGUCUUCUCGGGGacguGCa -3'
miRNA:   3'- gCAG--GGCCa--GAGCGGAAGGGCUCU----CG- -5'
9033 5' -59 NC_002512.2 + 195244 0.69 0.75607
Target:  5'- uGUCCCGacgaagccuccuguGUCUCGCCgcguuacagcucgcgUUCCCcgcGGGGGCc -3'
miRNA:   3'- gCAGGGC--------------CAGAGCGG---------------AAGGG---CUCUCG- -5'
9033 5' -59 NC_002512.2 + 194956 0.67 0.864459
Target:  5'- cCGUCgccgcgaccccgccgUCGGUCUCGUCcUCCUcucggcgcaaGAGGGCg -3'
miRNA:   3'- -GCAG---------------GGCCAGAGCGGaAGGG----------CUCUCG- -5'
9033 5' -59 NC_002512.2 + 193204 0.68 0.790395
Target:  5'- gCGUCuUCGG-CUCGCCguugCCCGGcAGCc -3'
miRNA:   3'- -GCAG-GGCCaGAGCGGaa--GGGCUcUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.