miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 5' -59 NC_002512.2 + 128100 0.66 0.888751
Target:  5'- cCGaCCCGGgcCUCcuCC-UCCCGAGGGUu -3'
miRNA:   3'- -GCaGGGCCa-GAGc-GGaAGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 79571 0.66 0.88811
Target:  5'- gCGUCcucgccgCCGGUCUCGCuccuccgccuCUUCgCGGGcGGCa -3'
miRNA:   3'- -GCAG-------GGCCAGAGCG----------GAAGgGCUC-UCG- -5'
9033 5' -59 NC_002512.2 + 45944 0.66 0.880933
Target:  5'- gCGUCCCGGgagcagaaccaGCCgagccgcugaagggUCCCGAG-GCa -3'
miRNA:   3'- -GCAGGGCCagag-------CGGa-------------AGGGCUCuCG- -5'
9033 5' -59 NC_002512.2 + 152689 0.66 0.875565
Target:  5'- gCGg-CCGGUCUCGUCgcgUCCCcggucGGGGUg -3'
miRNA:   3'- -GCagGGCCAGAGCGGa--AGGGc----UCUCG- -5'
9033 5' -59 NC_002512.2 + 188246 0.66 0.875564
Target:  5'- gCGUCuCCGGUCuccauaacUCGCUcUCgCCuGGAGCu -3'
miRNA:   3'- -GCAG-GGCCAG--------AGCGGaAG-GGcUCUCG- -5'
9033 5' -59 NC_002512.2 + 122766 0.66 0.875564
Target:  5'- cCGUCaccuaUCGGg-UCGUCUccCCCGAGGGCg -3'
miRNA:   3'- -GCAG-----GGCCagAGCGGAa-GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 103503 0.66 0.875564
Target:  5'- gGcCCCGGg--CGCUcUCCCGGGcGGCc -3'
miRNA:   3'- gCaGGGCCagaGCGGaAGGGCUC-UCG- -5'
9033 5' -59 NC_002512.2 + 134684 0.66 0.872833
Target:  5'- cCGUCaccagCGGgcgCUCGCCgggcugcccgacaUCCUGGGGGCc -3'
miRNA:   3'- -GCAGg----GCCa--GAGCGGa------------AGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 1844 0.67 0.86868
Target:  5'- cCGUCCgCGGgcgUCUCGCCgccgUCCGGucGCc -3'
miRNA:   3'- -GCAGG-GCC---AGAGCGGaa--GGGCUcuCG- -5'
9033 5' -59 NC_002512.2 + 131798 0.67 0.86868
Target:  5'- cCGUCCCcGUCaucCGCUcggacacgUCCCGGGAGa -3'
miRNA:   3'- -GCAGGGcCAGa--GCGGa-------AGGGCUCUCg -5'
9033 5' -59 NC_002512.2 + 4141 0.67 0.86868
Target:  5'- uGUCCCGG-C-CGCgc-CCCGAcuGAGCg -3'
miRNA:   3'- gCAGGGCCaGaGCGgaaGGGCU--CUCG- -5'
9033 5' -59 NC_002512.2 + 98192 0.67 0.86868
Target:  5'- cCGUCCgaGGgauggcguUCUCGgggaCCUUCCCGAGcAGUc -3'
miRNA:   3'- -GCAGGg-CC--------AGAGC----GGAAGGGCUC-UCG- -5'
9033 5' -59 NC_002512.2 + 88973 0.67 0.86868
Target:  5'- gCGUCUgGGUCUCcgGCUUcguggCCgGGGGGCc -3'
miRNA:   3'- -GCAGGgCCAGAG--CGGAa----GGgCUCUCG- -5'
9033 5' -59 NC_002512.2 + 229409 0.67 0.867981
Target:  5'- cCGUCgugagggCCGGUC-CuCCUccCCCGGGGGCg -3'
miRNA:   3'- -GCAG-------GGCCAGaGcGGAa-GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 5 0.67 0.867981
Target:  5'- cCGUCgugagggCCGGUC-CuCCUccCCCGGGGGCg -3'
miRNA:   3'- -GCAG-------GGCCAGaGcGGAa-GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 194956 0.67 0.864459
Target:  5'- cCGUCgccgcgaccccgccgUCGGUCUCGUCcUCCUcucggcgcaaGAGGGCg -3'
miRNA:   3'- -GCAG---------------GGCCAGAGCGGaAGGG----------CUCUCG- -5'
9033 5' -59 NC_002512.2 + 107060 0.67 0.861608
Target:  5'- cCGUCgCGGccuccaUCUCGU--UCUCGGGGGCg -3'
miRNA:   3'- -GCAGgGCC------AGAGCGgaAGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 153236 0.67 0.861608
Target:  5'- cCGUCCCGGgCUC-CCUggcaaaCCCGAu-GCg -3'
miRNA:   3'- -GCAGGGCCaGAGcGGAa-----GGGCUcuCG- -5'
9033 5' -59 NC_002512.2 + 182655 0.67 0.861608
Target:  5'- gCGUCUCGGcCUCGCCgaacUCCUu-GAuGCg -3'
miRNA:   3'- -GCAGGGCCaGAGCGGa---AGGGcuCU-CG- -5'
9033 5' -59 NC_002512.2 + 76648 0.67 0.861608
Target:  5'- -cUCCCGG-CUCGCUUcuucUCCCGAcGAa- -3'
miRNA:   3'- gcAGGGCCaGAGCGGA----AGGGCU-CUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.