miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 5' -59 NC_002512.2 + 76648 0.67 0.861608
Target:  5'- -cUCCCGG-CUCGCUUcuucUCCCGAcGAa- -3'
miRNA:   3'- gcAGGGCCaGAGCGGA----AGGGCU-CUcg -5'
9033 5' -59 NC_002512.2 + 151007 0.67 0.86089
Target:  5'- gGUCUCGGUCUCcauggcgacgcgaGCCacCUCGAG-GCg -3'
miRNA:   3'- gCAGGGCCAGAG-------------CGGaaGGGCUCuCG- -5'
9033 5' -59 NC_002512.2 + 84855 0.67 0.846918
Target:  5'- cCGUCCCGGg--CGUUgcgcgCCCGGGcguAGCg -3'
miRNA:   3'- -GCAGGGCCagaGCGGaa---GGGCUC---UCG- -5'
9033 5' -59 NC_002512.2 + 186797 0.67 0.846918
Target:  5'- cCGUCCCcGcugCUCGCCgcgcCCCGGGAc- -3'
miRNA:   3'- -GCAGGGcCa--GAGCGGaa--GGGCUCUcg -5'
9033 5' -59 NC_002512.2 + 43046 0.67 0.846165
Target:  5'- gGUCCUcggcgacgcgcagGGcCUCGCCgaggcaccggUCCCGGGGcGCg -3'
miRNA:   3'- gCAGGG-------------CCaGAGCGGa---------AGGGCUCU-CG- -5'
9033 5' -59 NC_002512.2 + 129745 0.67 0.84541
Target:  5'- uCGUCgaCCGGUC-CGCCgccgUCCacgacggugacgGAGAGCu -3'
miRNA:   3'- -GCAG--GGCCAGaGCGGa---AGGg-----------CUCUCG- -5'
9033 5' -59 NC_002512.2 + 19471 0.67 0.839311
Target:  5'- -aUCCCGGacCUCGCCUcCCCGcc-GCg -3'
miRNA:   3'- gcAGGGCCa-GAGCGGAaGGGCucuCG- -5'
9033 5' -59 NC_002512.2 + 213703 0.67 0.834667
Target:  5'- aCGUCCCGGUCgauUCGUUUUUCCaaaauauaugucuGGGCa -3'
miRNA:   3'- -GCAGGGCCAG---AGCGGAAGGGcu-----------CUCG- -5'
9033 5' -59 NC_002512.2 + 103556 0.67 0.831538
Target:  5'- cCGUCCCGGacgcggcggcCUCGUCgUCCa-GGAGCa -3'
miRNA:   3'- -GCAGGGCCa---------GAGCGGaAGGgcUCUCG- -5'
9033 5' -59 NC_002512.2 + 219591 0.67 0.831538
Target:  5'- aCGUCCUGGUggccgaCUCGCUg-CCCGGcuucucGGGCa -3'
miRNA:   3'- -GCAGGGCCA------GAGCGGaaGGGCU------CUCG- -5'
9033 5' -59 NC_002512.2 + 122877 0.67 0.831538
Target:  5'- gCG-CCCGGcUCUCgGCCgacCCCGGcccGGGCg -3'
miRNA:   3'- -GCaGGGCC-AGAG-CGGaa-GGGCU---CUCG- -5'
9033 5' -59 NC_002512.2 + 110466 0.67 0.831538
Target:  5'- gGUCCCcgcGGUCcaCGC--UCCCGAGcAGCg -3'
miRNA:   3'- gCAGGG---CCAGa-GCGgaAGGGCUC-UCG- -5'
9033 5' -59 NC_002512.2 + 188862 0.67 0.831538
Target:  5'- aG-CCCGGcguucuaaUCUCaGCUc-CCCGAGAGCa -3'
miRNA:   3'- gCaGGGCC--------AGAG-CGGaaGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 191196 0.67 0.830752
Target:  5'- cCGUCUccuccguCGG-CUCgGUCUUcCCCGGGGGCg -3'
miRNA:   3'- -GCAGG-------GCCaGAG-CGGAA-GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 100623 0.67 0.830752
Target:  5'- aGUCCCGGUCcccuaguccuggaUCGCCccgcgcagcagUCCCGcGAucGCg -3'
miRNA:   3'- gCAGGGCCAG-------------AGCGGa----------AGGGCuCU--CG- -5'
9033 5' -59 NC_002512.2 + 133867 0.67 0.830752
Target:  5'- aCGUCCUGGggcggCUCgaggagcggcucgGCCggcggUCCCGGGcGCu -3'
miRNA:   3'- -GCAGGGCCa----GAG-------------CGGa----AGGGCUCuCG- -5'
9033 5' -59 NC_002512.2 + 152922 0.68 0.823604
Target:  5'- uCGUCUCGGg-UCGCCagagUCGGGAGCg -3'
miRNA:   3'- -GCAGGGCCagAGCGGaag-GGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 80762 0.68 0.823604
Target:  5'- gGUCCCGGgggucCUCGCgg-CUCGAggagGAGCg -3'
miRNA:   3'- gCAGGGCCa----GAGCGgaaGGGCU----CUCG- -5'
9033 5' -59 NC_002512.2 + 149643 0.68 0.823604
Target:  5'- aCGgagCCCGGcC-CGCacgUCCCG-GAGCu -3'
miRNA:   3'- -GCa--GGGCCaGaGCGga-AGGGCuCUCG- -5'
9033 5' -59 NC_002512.2 + 84128 0.68 0.823604
Target:  5'- gCGUCUCGGUgagGuCCUcgUCCGAGAGCg -3'
miRNA:   3'- -GCAGGGCCAgagC-GGAa-GGGCUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.