miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9034 3' -55.1 NC_002512.2 + 162163 0.66 0.970214
Target:  5'- cGC-CGACCGcgaaaGCGgCcgCGUCcgUCGGUCa -3'
miRNA:   3'- -CGaGCUGGC-----UGCgGuaGUAG--AGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 186299 0.66 0.970214
Target:  5'- cCUCGuCCgcGACGCCGUgGUCaUCGG-Ca -3'
miRNA:   3'- cGAGCuGG--CUGCGGUAgUAG-AGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 216676 0.66 0.970214
Target:  5'- aGCU--GCaCGuACGCgaaguaCAUCGUCUCGGUCa -3'
miRNA:   3'- -CGAgcUG-GC-UGCG------GUAGUAGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 130692 0.66 0.969358
Target:  5'- uGCUCGugguggggcCCGcCGCCcgCAUCUacgagaucaagugcCGGUCa -3'
miRNA:   3'- -CGAGCu--------GGCuGCGGuaGUAGA--------------GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 131680 0.66 0.967292
Target:  5'- uGCUCGGgaagguccCCGAgaaCGCCAUCccUCggaCGGUCg -3'
miRNA:   3'- -CGAGCU--------GGCU---GCGGUAGu-AGa--GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 104948 0.66 0.967292
Target:  5'- gGCgUCGGCgCGGCGCCGgc--CUCGuGUCu -3'
miRNA:   3'- -CG-AGCUG-GCUGCGGUaguaGAGC-CAG- -5'
9034 3' -55.1 NC_002512.2 + 25045 0.66 0.967292
Target:  5'- ---gGACCGAcCGCCGUCGUCcuccCGGa- -3'
miRNA:   3'- cgagCUGGCU-GCGGUAGUAGa---GCCag -5'
9034 3' -55.1 NC_002512.2 + 102240 0.66 0.966377
Target:  5'- cGCUcugucCGACCcgggcccggguccgGGCGUCGUcCAUCUCGGcUCg -3'
miRNA:   3'- -CGA-----GCUGG--------------CUGCGGUA-GUAGAGCC-AG- -5'
9034 3' -55.1 NC_002512.2 + 27763 0.67 0.964173
Target:  5'- gGCcgaGACCGGCGCCAcCAgCUgacgaggacgCGGUCg -3'
miRNA:   3'- -CGag-CUGGCUGCGGUaGUaGA----------GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 90637 0.67 0.964173
Target:  5'- gGCgCGAcCCGGCGCCG-CGgccgCGGUCu -3'
miRNA:   3'- -CGaGCU-GGCUGCGGUaGUaga-GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 158787 0.67 0.964173
Target:  5'- cGCUggUGGCCcggGGCGUCGUCGacuUCUCGGcCg -3'
miRNA:   3'- -CGA--GCUGG---CUGCGGUAGU---AGAGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 92132 0.67 0.964173
Target:  5'- cCUCGuuCCGACaucuUCGUCGUCUCGGa- -3'
miRNA:   3'- cGAGCu-GGCUGc---GGUAGUAGAGCCag -5'
9034 3' -55.1 NC_002512.2 + 202140 0.67 0.960851
Target:  5'- uCUCGGCCGcCGCCG-CGgggCgggUGGUCg -3'
miRNA:   3'- cGAGCUGGCuGCGGUaGUa--Ga--GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 21763 0.67 0.960851
Target:  5'- uGC-CGAuaaCCGugGCCG-CGUCUCuGGUUu -3'
miRNA:   3'- -CGaGCU---GGCugCGGUaGUAGAG-CCAG- -5'
9034 3' -55.1 NC_002512.2 + 63435 0.67 0.960851
Target:  5'- cCUCGAgcCCGGCGCCGUCGcCccCGGa- -3'
miRNA:   3'- cGAGCU--GGCUGCGGUAGUaGa-GCCag -5'
9034 3' -55.1 NC_002512.2 + 120402 0.67 0.957323
Target:  5'- -gUCGAaCGGCGCCGaCGUCaguUUGGUCa -3'
miRNA:   3'- cgAGCUgGCUGCGGUaGUAG---AGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 126539 0.67 0.957323
Target:  5'- cCUCGACCG-UGCCGUCcgCccCGGg- -3'
miRNA:   3'- cGAGCUGGCuGCGGUAGuaGa-GCCag -5'
9034 3' -55.1 NC_002512.2 + 11997 0.67 0.957323
Target:  5'- cGCUCGACgacgCGGcCGCCG--AUCUCGGa- -3'
miRNA:   3'- -CGAGCUG----GCU-GCGGUagUAGAGCCag -5'
9034 3' -55.1 NC_002512.2 + 174148 0.67 0.953583
Target:  5'- cGCUCGAcaCCGugGUCAccgCGUCcCGGg- -3'
miRNA:   3'- -CGAGCU--GGCugCGGUa--GUAGaGCCag -5'
9034 3' -55.1 NC_002512.2 + 72861 0.67 0.953583
Target:  5'- cGCUCcgGGCCGcguCGCCGUUGUCgCGGg- -3'
miRNA:   3'- -CGAG--CUGGCu--GCGGUAGUAGaGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.