miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9034 3' -55.1 NC_002512.2 + 39535 0.66 0.975488
Target:  5'- ---gGGCCGACGCCcccGUCGUCguagaGGUa -3'
miRNA:   3'- cgagCUGGCUGCGG---UAGUAGag---CCAg -5'
9034 3' -55.1 NC_002512.2 + 78436 0.66 0.975488
Target:  5'- uUUCGGCCGGCGCCA---UCUUGaGcCa -3'
miRNA:   3'- cGAGCUGGCUGCGGUaguAGAGC-CaG- -5'
9034 3' -55.1 NC_002512.2 + 182622 0.66 0.974744
Target:  5'- gGCUCGgugGCCGcgcgaucuucuccaGCGCCugCGUCUCGGcCu -3'
miRNA:   3'- -CGAGC---UGGC--------------UGCGGuaGUAGAGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 116957 0.66 0.974744
Target:  5'- gGCUCGcgcgccaccgggccGCCGACGCCc-CGUC-CGGg- -3'
miRNA:   3'- -CGAGC--------------UGGCUGCGGuaGUAGaGCCag -5'
9034 3' -55.1 NC_002512.2 + 96092 0.66 0.974493
Target:  5'- gGCgCGACCGucguccccgccgcCGCCGUCGUCgUCGucGUCg -3'
miRNA:   3'- -CGaGCUGGCu------------GCGGUAGUAG-AGC--CAG- -5'
9034 3' -55.1 NC_002512.2 + 113174 0.66 0.973984
Target:  5'- gGCgggacgCGACCGGCgucGCCGUCcgCUCcgcgagcgggagccgGGUCc -3'
miRNA:   3'- -CGa-----GCUGGCUG---CGGUAGuaGAG---------------CCAG- -5'
9034 3' -55.1 NC_002512.2 + 38413 0.66 0.972944
Target:  5'- cGCU-GuCCGGCGCC-UCGUaCUCGGcCc -3'
miRNA:   3'- -CGAgCuGGCUGCGGuAGUA-GAGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 130617 0.66 0.972944
Target:  5'- uGCUCGACCccGCGuCCggCGUcCUCGGg- -3'
miRNA:   3'- -CGAGCUGGc-UGC-GGuaGUA-GAGCCag -5'
9034 3' -55.1 NC_002512.2 + 113139 0.66 0.972944
Target:  5'- gGCUCGGCCugguccauCGCCAUCAgC-CGGg- -3'
miRNA:   3'- -CGAGCUGGcu------GCGGUAGUaGaGCCag -5'
9034 3' -55.1 NC_002512.2 + 108067 0.66 0.972944
Target:  5'- cGUcCGGCCGACgGCgAUCGUCgUCGucGUCg -3'
miRNA:   3'- -CGaGCUGGCUG-CGgUAGUAG-AGC--CAG- -5'
9034 3' -55.1 NC_002512.2 + 72213 0.66 0.972944
Target:  5'- uGCUcCGGCC-ACGUCGcCAUaUUCGGUCa -3'
miRNA:   3'- -CGA-GCUGGcUGCGGUaGUA-GAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 3960 0.66 0.972944
Target:  5'- -gUCG-UCGuCGUCGUCGUCcccUCGGUCg -3'
miRNA:   3'- cgAGCuGGCuGCGGUAGUAG---AGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 94563 0.66 0.972944
Target:  5'- gGCgCGGCUGACGCCGac--CUCGGg- -3'
miRNA:   3'- -CGaGCUGGCUGCGGUaguaGAGCCag -5'
9034 3' -55.1 NC_002512.2 + 191192 0.66 0.972944
Target:  5'- --gCGACCGucucCuCCGUCggCUCGGUCu -3'
miRNA:   3'- cgaGCUGGCu---GcGGUAGuaGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 83279 0.66 0.972944
Target:  5'- -gUCGGCagcaGAggcgucuggggcCGCCGuUCGUCUCGGUUg -3'
miRNA:   3'- cgAGCUGg---CU------------GCGGU-AGUAGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 186299 0.66 0.970214
Target:  5'- cCUCGuCCgcGACGCCGUgGUCaUCGG-Ca -3'
miRNA:   3'- cGAGCuGG--CUGCGGUAgUAG-AGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 53891 0.66 0.970214
Target:  5'- --cCGACgGACGagGagAUCUCGGUCg -3'
miRNA:   3'- cgaGCUGgCUGCggUagUAGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 138153 0.66 0.970214
Target:  5'- --aCGAUCGACGCCuuggCGUCcacguucCGGUCc -3'
miRNA:   3'- cgaGCUGGCUGCGGua--GUAGa------GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 216676 0.66 0.970214
Target:  5'- aGCU--GCaCGuACGCgaaguaCAUCGUCUCGGUCa -3'
miRNA:   3'- -CGAgcUG-GC-UGCG------GUAGUAGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 40225 0.66 0.970214
Target:  5'- aGUagGGCCGACGCCggUGUCggCGcGUCc -3'
miRNA:   3'- -CGagCUGGCUGCGGuaGUAGa-GC-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.