miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9034 3' -55.1 NC_002512.2 + 39535 0.66 0.975488
Target:  5'- ---gGGCCGACGCCcccGUCGUCguagaGGUa -3'
miRNA:   3'- cgagCUGGCUGCGG---UAGUAGag---CCAg -5'
9034 3' -55.1 NC_002512.2 + 40225 0.66 0.970214
Target:  5'- aGUagGGCCGACGCCggUGUCggCGcGUCc -3'
miRNA:   3'- -CGagCUGGCUGCGGuaGUAGa-GC-CAG- -5'
9034 3' -55.1 NC_002512.2 + 44693 0.71 0.840913
Target:  5'- gGCgUCGACCGcCGCCG-CGUuCUCGGa- -3'
miRNA:   3'- -CG-AGCUGGCuGCGGUaGUA-GAGCCag -5'
9034 3' -55.1 NC_002512.2 + 53891 0.66 0.970214
Target:  5'- --cCGACgGACGagGagAUCUCGGUCg -3'
miRNA:   3'- cgaGCUGgCUGCggUagUAGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 60888 0.72 0.799354
Target:  5'- cGC-CGAgCCGGCGCgCGaCcgCUCGGUCg -3'
miRNA:   3'- -CGaGCU-GGCUGCG-GUaGuaGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 63435 0.67 0.960851
Target:  5'- cCUCGAgcCCGGCGCCGUCGcCccCGGa- -3'
miRNA:   3'- cGAGCU--GGCUGCGGUAGUaGa-GCCag -5'
9034 3' -55.1 NC_002512.2 + 67766 0.68 0.931607
Target:  5'- gGgUCGucuCCGGCGCCGggGUCgUCGGUg -3'
miRNA:   3'- -CgAGCu--GGCUGCGGUagUAG-AGCCAg -5'
9034 3' -55.1 NC_002512.2 + 70234 0.68 0.935973
Target:  5'- gGCUCGguGCCGGCGCuCGUCugcgagaAUCgcgGGUCa -3'
miRNA:   3'- -CGAGC--UGGCUGCG-GUAG-------UAGag-CCAG- -5'
9034 3' -55.1 NC_002512.2 + 71233 0.68 0.945456
Target:  5'- --aUGACCGugGCCucgaCGUCggGGUCg -3'
miRNA:   3'- cgaGCUGGCugCGGua--GUAGagCCAG- -5'
9034 3' -55.1 NC_002512.2 + 72213 0.66 0.972944
Target:  5'- uGCUcCGGCC-ACGUCGcCAUaUUCGGUCa -3'
miRNA:   3'- -CGA-GCUGGcUGCGGUaGUA-GAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 72861 0.67 0.953583
Target:  5'- cGCUCcgGGCCGcguCGCCGUUGUCgCGGg- -3'
miRNA:   3'- -CGAG--CUGGCu--GCGGUAGUAGaGCCag -5'
9034 3' -55.1 NC_002512.2 + 75209 0.66 0.977854
Target:  5'- cGCUCGgaGCCGGacgguCGCCcgaCGUCggaCGGUCg -3'
miRNA:   3'- -CGAGC--UGGCU-----GCGGua-GUAGa--GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 75560 0.7 0.884847
Target:  5'- gGCUCG-CCGGggcggggcCGCCGcCGUCgCGGUCg -3'
miRNA:   3'- -CGAGCuGGCU--------GCGGUaGUAGaGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 76692 0.66 0.980046
Target:  5'- cGCUCGuCUGAUGUCGUCGg--CGG-Cg -3'
miRNA:   3'- -CGAGCuGGCUGCGGUAGUagaGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 78016 0.74 0.657478
Target:  5'- -aUCG-CCGGCGCCcacgaGUCAUC-CGGUCg -3'
miRNA:   3'- cgAGCuGGCUGCGG-----UAGUAGaGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 78436 0.66 0.975488
Target:  5'- uUUCGGCCGGCGCCA---UCUUGaGcCa -3'
miRNA:   3'- cGAGCUGGCUGCGGUaguAGAGC-CaG- -5'
9034 3' -55.1 NC_002512.2 + 78523 0.69 0.91
Target:  5'- uUUCGGCCGGCGCCAUCuuga-GG-Ca -3'
miRNA:   3'- cGAGCUGGCUGCGGUAGuagagCCaG- -5'
9034 3' -55.1 NC_002512.2 + 78661 0.68 0.926542
Target:  5'- cGgUCGAgCCGGCGCCGggg-CUCGGa- -3'
miRNA:   3'- -CgAGCU-GGCUGCGGUaguaGAGCCag -5'
9034 3' -55.1 NC_002512.2 + 82128 0.7 0.856335
Target:  5'- gGgaCGGCCG-CGCUGgcgcaCGUCUCGGUCc -3'
miRNA:   3'- -CgaGCUGGCuGCGGUa----GUAGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 82248 0.71 0.807981
Target:  5'- aGCgggagCGGCCGcCGCCGUCGUCgUCGcccccGUCg -3'
miRNA:   3'- -CGa----GCUGGCuGCGGUAGUAG-AGC-----CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.