Results 21 - 40 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9034 | 3' | -55.1 | NC_002512.2 | + | 39535 | 0.66 | 0.975488 |
Target: 5'- ---gGGCCGACGCCcccGUCGUCguagaGGUa -3' miRNA: 3'- cgagCUGGCUGCGG---UAGUAGag---CCAg -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 78436 | 0.66 | 0.975488 |
Target: 5'- uUUCGGCCGGCGCCA---UCUUGaGcCa -3' miRNA: 3'- cGAGCUGGCUGCGGUaguAGAGC-CaG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 108067 | 0.66 | 0.972944 |
Target: 5'- cGUcCGGCCGACgGCgAUCGUCgUCGucGUCg -3' miRNA: 3'- -CGaGCUGGCUG-CGgUAGUAG-AGC--CAG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 25045 | 0.66 | 0.967292 |
Target: 5'- ---gGACCGAcCGCCGUCGUCcuccCGGa- -3' miRNA: 3'- cgagCUGGCU-GCGGUAGUAGa---GCCag -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 104948 | 0.66 | 0.967292 |
Target: 5'- gGCgUCGGCgCGGCGCCGgc--CUCGuGUCu -3' miRNA: 3'- -CG-AGCUG-GCUGCGGUaguaGAGC-CAG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 130692 | 0.66 | 0.969358 |
Target: 5'- uGCUCGugguggggcCCGcCGCCcgCAUCUacgagaucaagugcCGGUCa -3' miRNA: 3'- -CGAGCu--------GGCuGCGGuaGUAGA--------------GCCAG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 40225 | 0.66 | 0.970214 |
Target: 5'- aGUagGGCCGACGCCggUGUCggCGcGUCc -3' miRNA: 3'- -CGagCUGGCUGCGGuaGUAGa-GC-CAG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 131680 | 0.66 | 0.967292 |
Target: 5'- uGCUCGGgaagguccCCGAgaaCGCCAUCccUCggaCGGUCg -3' miRNA: 3'- -CGAGCU--------GGCU---GCGGUAGu-AGa--GCCAG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 53891 | 0.66 | 0.970214 |
Target: 5'- --cCGACgGACGagGagAUCUCGGUCg -3' miRNA: 3'- cgaGCUGgCUGCggUagUAGAGCCAG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 138153 | 0.66 | 0.970214 |
Target: 5'- --aCGAUCGACGCCuuggCGUCcacguucCGGUCc -3' miRNA: 3'- cgaGCUGGCUGCGGua--GUAGa------GCCAG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 3960 | 0.66 | 0.972944 |
Target: 5'- -gUCG-UCGuCGUCGUCGUCcccUCGGUCg -3' miRNA: 3'- cgAGCuGGCuGCGGUAGUAG---AGCCAG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 38413 | 0.66 | 0.972944 |
Target: 5'- cGCU-GuCCGGCGCC-UCGUaCUCGGcCc -3' miRNA: 3'- -CGAgCuGGCUGCGGuAGUA-GAGCCaG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 116957 | 0.66 | 0.974744 |
Target: 5'- gGCUCGcgcgccaccgggccGCCGACGCCc-CGUC-CGGg- -3' miRNA: 3'- -CGAGC--------------UGGCUGCGGuaGUAGaGCCag -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 130617 | 0.66 | 0.972944 |
Target: 5'- uGCUCGACCccGCGuCCggCGUcCUCGGg- -3' miRNA: 3'- -CGAGCUGGc-UGC-GGuaGUA-GAGCCag -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 113139 | 0.66 | 0.972944 |
Target: 5'- gGCUCGGCCugguccauCGCCAUCAgC-CGGg- -3' miRNA: 3'- -CGAGCUGGcu------GCGGUAGUaGaGCCag -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 83279 | 0.66 | 0.972944 |
Target: 5'- -gUCGGCagcaGAggcgucuggggcCGCCGuUCGUCUCGGUUg -3' miRNA: 3'- cgAGCUGg---CU------------GCGGU-AGUAGAGCCAG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 108736 | 0.66 | 0.977854 |
Target: 5'- cCUgGGCCG-CgGCCggCGUCUCGGcCg -3' miRNA: 3'- cGAgCUGGCuG-CGGuaGUAGAGCCaG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 4556 | 0.66 | 0.977854 |
Target: 5'- gGCgCGACCGACGgCugcggCGUCUgGGg- -3' miRNA: 3'- -CGaGCUGGCUGCgGua---GUAGAgCCag -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 24872 | 0.66 | 0.977625 |
Target: 5'- gGCccCGACCGAgGCgCGUCGUUUcgcccccgccuucCGGUCc -3' miRNA: 3'- -CGa-GCUGGCUgCG-GUAGUAGA-------------GCCAG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 169031 | 0.66 | 0.975488 |
Target: 5'- gGCguccgCGAgCGGCGCCggCAUCuccUCGGg- -3' miRNA: 3'- -CGa----GCUgGCUGCGGuaGUAG---AGCCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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