Results 21 - 40 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9034 | 3' | -55.1 | NC_002512.2 | + | 82248 | 0.71 | 0.807981 |
Target: 5'- aGCgggagCGGCCGcCGCCGUCGUCgUCGcccccGUCg -3' miRNA: 3'- -CGa----GCUGGCuGCGGUAGUAG-AGC-----CAG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 172648 | 0.71 | 0.816458 |
Target: 5'- gGCgguagCGGCCugcgggGACGCCcgCGUCUCGGcCc -3' miRNA: 3'- -CGa----GCUGG------CUGCGGuaGUAGAGCCaG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 225600 | 0.71 | 0.816458 |
Target: 5'- cUUCGACCaGCugGCCGUCGUCgucCGGUCc -3' miRNA: 3'- cGAGCUGGcUG--CGGUAGUAGa--GCCAG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 168989 | 0.71 | 0.824776 |
Target: 5'- cGCUCGACCGagcggucgcGCGCCGg---CUCGG-Cg -3' miRNA: 3'- -CGAGCUGGC---------UGCGGUaguaGAGCCaG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 127538 | 0.71 | 0.832931 |
Target: 5'- cGgaCGACCGACGCCcggacccggcucGUCGUC-CGGg- -3' miRNA: 3'- -CgaGCUGGCUGCGG------------UAGUAGaGCCag -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 158928 | 0.71 | 0.832931 |
Target: 5'- gGCuUCGGCgggGGCGCCGgcggCcUCUCGGUCa -3' miRNA: 3'- -CG-AGCUGg--CUGCGGUa---GuAGAGCCAG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 203608 | 0.71 | 0.840913 |
Target: 5'- -aUCGACCGGCGugaaCCAU-AUCUcCGGUCg -3' miRNA: 3'- cgAGCUGGCUGC----GGUAgUAGA-GCCAG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 44693 | 0.71 | 0.840913 |
Target: 5'- gGCgUCGACCGcCGCCG-CGUuCUCGGa- -3' miRNA: 3'- -CG-AGCUGGCuGCGGUaGUA-GAGCCag -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 28585 | 0.7 | 0.848716 |
Target: 5'- aGCUgaucCGAgCGGUGCgCGUCAUCUCGGUg -3' miRNA: 3'- -CGA----GCUgGCUGCG-GUAGUAGAGCCAg -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 90938 | 0.7 | 0.848716 |
Target: 5'- gGCgCGGCCGcCGCCGUCGUggUGGUg -3' miRNA: 3'- -CGaGCUGGCuGCGGUAGUAgaGCCAg -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 108999 | 0.7 | 0.848716 |
Target: 5'- uGCUCGucggcGCCGGCGgCGUCGUCcugCGGa- -3' miRNA: 3'- -CGAGC-----UGGCUGCgGUAGUAGa--GCCag -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 82128 | 0.7 | 0.856335 |
Target: 5'- gGgaCGGCCG-CGCUGgcgcaCGUCUCGGUCc -3' miRNA: 3'- -CgaGCUGGCuGCGGUa----GUAGAGCCAG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 6047 | 0.7 | 0.86668 |
Target: 5'- cCUCGGCCuccuccuuccccuccGacGCGCCGUCGUCgucccggCGGUCg -3' miRNA: 3'- cGAGCUGG---------------C--UGCGGUAGUAGa------GCCAG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 3181 | 0.7 | 0.87028 |
Target: 5'- aCUCGuuucgcgUCGACGUCGUCGUCgaacgugUCGGUCg -3' miRNA: 3'- cGAGCu------GGCUGCGGUAGUAG-------AGCCAG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 222190 | 0.7 | 0.870994 |
Target: 5'- gGCcgCGGCCGGCGUCGUCcguuUCUUcGUCg -3' miRNA: 3'- -CGa-GCUGGCUGCGGUAGu---AGAGcCAG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 193318 | 0.7 | 0.870994 |
Target: 5'- uCUCGccgcuUCGGCGCguUCAUCUgCGGUCu -3' miRNA: 3'- cGAGCu----GGCUGCGguAGUAGA-GCCAG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 198080 | 0.7 | 0.870994 |
Target: 5'- cCUCGACCG-CGCCccggCGUCUCcccGUCg -3' miRNA: 3'- cGAGCUGGCuGCGGua--GUAGAGc--CAG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 111198 | 0.7 | 0.878024 |
Target: 5'- gGCaCGAUCG-CGCCgAUCAUCUUGGcCa -3' miRNA: 3'- -CGaGCUGGCuGCGG-UAGUAGAGCCaG- -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 92560 | 0.7 | 0.878024 |
Target: 5'- aGCcCGACCaGCGCCGguaggUCGcUCUCGGUa -3' miRNA: 3'- -CGaGCUGGcUGCGGU-----AGU-AGAGCCAg -5' |
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9034 | 3' | -55.1 | NC_002512.2 | + | 119303 | 0.7 | 0.884847 |
Target: 5'- gGCgaGAUCGACGUCAagcUCUCGGUCa -3' miRNA: 3'- -CGagCUGGCUGCGGUaguAGAGCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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