miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9034 3' -55.1 NC_002512.2 + 151240 1.12 0.003897
Target:  5'- gGCUCGACCGACGCCAUCAUCUCGGUCg -3'
miRNA:   3'- -CGAGCUGGCUGCGGUAGUAGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 226786 0.82 0.298308
Target:  5'- uCUCGGgCGACGCCGUgGUCUCGGcCg -3'
miRNA:   3'- cGAGCUgGCUGCGGUAgUAGAGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 189616 0.78 0.455467
Target:  5'- cGCggCGGCCGcACGCgAUCGUCgCGGUCg -3'
miRNA:   3'- -CGa-GCUGGC-UGCGgUAGUAGaGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 2189 0.77 0.520132
Target:  5'- cGCgccccCG-CCGcCGUCGUCGUCUCGGUCg -3'
miRNA:   3'- -CGa----GCuGGCuGCGGUAGUAGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 223638 0.76 0.548949
Target:  5'- uGCUCGGCgGGC-UCGUCAugcUCUCGGUCu -3'
miRNA:   3'- -CGAGCUGgCUGcGGUAGU---AGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 123255 0.76 0.588091
Target:  5'- aGCUCGAcgaCCGGCGCCG-CAUgUCGGa- -3'
miRNA:   3'- -CGAGCU---GGCUGCGGUaGUAgAGCCag -5'
9034 3' -55.1 NC_002512.2 + 141448 0.76 0.588091
Target:  5'- cGCUCGGuCCGACGuCCGUUAUCgCGGa- -3'
miRNA:   3'- -CGAGCU-GGCUGC-GGUAGUAGaGCCag -5'
9034 3' -55.1 NC_002512.2 + 139645 0.75 0.627709
Target:  5'- uGCUCGACgaggGACGCCAacaucgUCGUCgacUCGGUCc -3'
miRNA:   3'- -CGAGCUGg---CUGCGGU------AGUAG---AGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 123215 0.75 0.637638
Target:  5'- cGCgacgCGuACCGACGCUA-CAUCUCGGa- -3'
miRNA:   3'- -CGa---GC-UGGCUGCGGUaGUAGAGCCag -5'
9034 3' -55.1 NC_002512.2 + 78016 0.74 0.657478
Target:  5'- -aUCG-CCGGCGCCcacgaGUCAUC-CGGUCg -3'
miRNA:   3'- cgAGCuGGCUGCGG-----UAGUAGaGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 83167 0.74 0.677242
Target:  5'- gGCcgCGGCCGccgcccCGCCGUCGUCUCcGUCg -3'
miRNA:   3'- -CGa-GCUGGCu-----GCGGUAGUAGAGcCAG- -5'
9034 3' -55.1 NC_002512.2 + 116947 0.74 0.68118
Target:  5'- gGCUCGACCGggGCGCCAUCcgcaacgagcugcugAUCgagcUGGUCc -3'
miRNA:   3'- -CGAGCUGGC--UGCGGUAG---------------UAGa---GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 195806 0.73 0.725898
Target:  5'- aUUUGGCCG-CGCCgGUCcauUCUCGGUCa -3'
miRNA:   3'- cGAGCUGGCuGCGG-UAGu--AGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 104747 0.73 0.725898
Target:  5'- cGCgUCG-CCGuccucguCGCCGUCGUCcCGGUCg -3'
miRNA:   3'- -CG-AGCuGGCu------GCGGUAGUAGaGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 113722 0.72 0.754246
Target:  5'- aCUCGcCCGGCGCCAgCggCUCGGg- -3'
miRNA:   3'- cGAGCuGGCUGCGGUaGuaGAGCCag -5'
9034 3' -55.1 NC_002512.2 + 126455 0.72 0.763504
Target:  5'- gGCggCGGCCGccuuguuCGCCGUCGUCgUCGcGUCg -3'
miRNA:   3'- -CGa-GCUGGCu------GCGGUAGUAG-AGC-CAG- -5'
9034 3' -55.1 NC_002512.2 + 126550 0.72 0.763504
Target:  5'- aCUCG-UCGACGCCccCAcgCUCGGUCg -3'
miRNA:   3'- cGAGCuGGCUGCGGuaGUa-GAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 134868 0.72 0.769006
Target:  5'- uCUCGGgCGACGCCGUCGgggaccuggacugCUCGGa- -3'
miRNA:   3'- cGAGCUgGCUGCGGUAGUa------------GAGCCag -5'
9034 3' -55.1 NC_002512.2 + 60888 0.72 0.799354
Target:  5'- cGC-CGAgCCGGCGCgCGaCcgCUCGGUCg -3'
miRNA:   3'- -CGaGCU-GGCUGCG-GUaGuaGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 82248 0.71 0.807981
Target:  5'- aGCgggagCGGCCGcCGCCGUCGUCgUCGcccccGUCg -3'
miRNA:   3'- -CGa----GCUGGCuGCGGUAGUAG-AGC-----CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.