miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9034 3' -55.1 NC_002512.2 + 119303 0.7 0.884847
Target:  5'- gGCgaGAUCGACGUCAagcUCUCGGUCa -3'
miRNA:   3'- -CGagCUGGCUGCGGUaguAGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 90938 0.7 0.848716
Target:  5'- gGCgCGGCCGcCGCCGUCGUggUGGUg -3'
miRNA:   3'- -CGaGCUGGCuGCGGUAGUAgaGCCAg -5'
9034 3' -55.1 NC_002512.2 + 108999 0.7 0.848716
Target:  5'- uGCUCGucggcGCCGGCGgCGUCGUCcugCGGa- -3'
miRNA:   3'- -CGAGC-----UGGCUGCgGUAGUAGa--GCCag -5'
9034 3' -55.1 NC_002512.2 + 28585 0.7 0.848716
Target:  5'- aGCUgaucCGAgCGGUGCgCGUCAUCUCGGUg -3'
miRNA:   3'- -CGA----GCUgGCUGCG-GUAGUAGAGCCAg -5'
9034 3' -55.1 NC_002512.2 + 6047 0.7 0.86668
Target:  5'- cCUCGGCCuccuccuuccccuccGacGCGCCGUCGUCgucccggCGGUCg -3'
miRNA:   3'- cGAGCUGG---------------C--UGCGGUAGUAGa------GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 193318 0.7 0.870994
Target:  5'- uCUCGccgcuUCGGCGCguUCAUCUgCGGUCu -3'
miRNA:   3'- cGAGCu----GGCUGCGguAGUAGA-GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 92560 0.7 0.878024
Target:  5'- aGCcCGACCaGCGCCGguaggUCGcUCUCGGUa -3'
miRNA:   3'- -CGaGCUGGcUGCGGU-----AGU-AGAGCCAg -5'
9034 3' -55.1 NC_002512.2 + 111198 0.7 0.878024
Target:  5'- gGCaCGAUCG-CGCCgAUCAUCUUGGcCa -3'
miRNA:   3'- -CGaGCUGGCuGCGG-UAGUAGAGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 75560 0.7 0.884847
Target:  5'- gGCUCG-CCGGggcggggcCGCCGcCGUCgCGGUCg -3'
miRNA:   3'- -CGAGCuGGCU--------GCGGUaGUAGaGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 203608 0.71 0.840913
Target:  5'- -aUCGACCGGCGugaaCCAU-AUCUcCGGUCg -3'
miRNA:   3'- cgAGCUGGCUGC----GGUAgUAGA-GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 44693 0.71 0.840913
Target:  5'- gGCgUCGACCGcCGCCG-CGUuCUCGGa- -3'
miRNA:   3'- -CG-AGCUGGCuGCGGUaGUA-GAGCCag -5'
9034 3' -55.1 NC_002512.2 + 127538 0.71 0.832931
Target:  5'- cGgaCGACCGACGCCcggacccggcucGUCGUC-CGGg- -3'
miRNA:   3'- -CgaGCUGGCUGCGG------------UAGUAGaGCCag -5'
9034 3' -55.1 NC_002512.2 + 123255 0.76 0.588091
Target:  5'- aGCUCGAcgaCCGGCGCCG-CAUgUCGGa- -3'
miRNA:   3'- -CGAGCU---GGCUGCGGUaGUAgAGCCag -5'
9034 3' -55.1 NC_002512.2 + 83167 0.74 0.677242
Target:  5'- gGCcgCGGCCGccgcccCGCCGUCGUCUCcGUCg -3'
miRNA:   3'- -CGa-GCUGGCu-----GCGGUAGUAGAGcCAG- -5'
9034 3' -55.1 NC_002512.2 + 104747 0.73 0.725898
Target:  5'- cGCgUCG-CCGuccucguCGCCGUCGUCcCGGUCg -3'
miRNA:   3'- -CG-AGCuGGCu------GCGGUAGUAGaGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 195806 0.73 0.725898
Target:  5'- aUUUGGCCG-CGCCgGUCcauUCUCGGUCa -3'
miRNA:   3'- cGAGCUGGCuGCGG-UAGu--AGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 113722 0.72 0.754246
Target:  5'- aCUCGcCCGGCGCCAgCggCUCGGg- -3'
miRNA:   3'- cGAGCuGGCUGCGGUaGuaGAGCCag -5'
9034 3' -55.1 NC_002512.2 + 134868 0.72 0.769006
Target:  5'- uCUCGGgCGACGCCGUCGgggaccuggacugCUCGGa- -3'
miRNA:   3'- cGAGCUgGCUGCGGUAGUa------------GAGCCag -5'
9034 3' -55.1 NC_002512.2 + 60888 0.72 0.799354
Target:  5'- cGC-CGAgCCGGCGCgCGaCcgCUCGGUCg -3'
miRNA:   3'- -CGaGCU-GGCUGCG-GUaGuaGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 82248 0.71 0.807981
Target:  5'- aGCgggagCGGCCGcCGCCGUCGUCgUCGcccccGUCg -3'
miRNA:   3'- -CGa----GCUGGCuGCGGUAGUAG-AGC-----CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.