miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9034 3' -55.1 NC_002512.2 + 39535 0.66 0.975488
Target:  5'- ---gGGCCGACGCCcccGUCGUCguagaGGUa -3'
miRNA:   3'- cgagCUGGCUGCGG---UAGUAGag---CCAg -5'
9034 3' -55.1 NC_002512.2 + 128773 0.66 0.977854
Target:  5'- cCUCGACgaGGCGCUGcUCAcccUCUgGGUCu -3'
miRNA:   3'- cGAGCUGg-CUGCGGU-AGU---AGAgCCAG- -5'
9034 3' -55.1 NC_002512.2 + 75209 0.66 0.977854
Target:  5'- cGCUCGgaGCCGGacgguCGCCcgaCGUCggaCGGUCg -3'
miRNA:   3'- -CGAGC--UGGCU-----GCGGua-GUAGa--GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 24872 0.66 0.977625
Target:  5'- gGCccCGACCGAgGCgCGUCGUUUcgcccccgccuucCGGUCc -3'
miRNA:   3'- -CGa-GCUGGCUgCG-GUAGUAGA-------------GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 53891 0.66 0.970214
Target:  5'- --cCGACgGACGagGagAUCUCGGUCg -3'
miRNA:   3'- cgaGCUGgCUGCggUagUAGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 40225 0.66 0.970214
Target:  5'- aGUagGGCCGACGCCggUGUCggCGcGUCc -3'
miRNA:   3'- -CGagCUGGCUGCGGuaGUAGa-GC-CAG- -5'
9034 3' -55.1 NC_002512.2 + 3960 0.66 0.972944
Target:  5'- -gUCG-UCGuCGUCGUCGUCcccUCGGUCg -3'
miRNA:   3'- cgAGCuGGCuGCGGUAGUAG---AGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 4556 0.66 0.977854
Target:  5'- gGCgCGACCGACGgCugcggCGUCUgGGg- -3'
miRNA:   3'- -CGaGCUGGCUGCgGua---GUAGAgCCag -5'
9034 3' -55.1 NC_002512.2 + 78436 0.66 0.975488
Target:  5'- uUUCGGCCGGCGCCA---UCUUGaGcCa -3'
miRNA:   3'- cGAGCUGGCUGCGGUaguAGAGC-CaG- -5'
9034 3' -55.1 NC_002512.2 + 138153 0.66 0.970214
Target:  5'- --aCGAUCGACGCCuuggCGUCcacguucCGGUCc -3'
miRNA:   3'- cgaGCUGGCUGCGGua--GUAGa------GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 113139 0.66 0.972944
Target:  5'- gGCUCGGCCugguccauCGCCAUCAgC-CGGg- -3'
miRNA:   3'- -CGAGCUGGcu------GCGGUAGUaGaGCCag -5'
9034 3' -55.1 NC_002512.2 + 130692 0.66 0.969358
Target:  5'- uGCUCGugguggggcCCGcCGCCcgCAUCUacgagaucaagugcCGGUCa -3'
miRNA:   3'- -CGAGCu--------GGCuGCGGuaGUAGA--------------GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 131680 0.66 0.967292
Target:  5'- uGCUCGGgaagguccCCGAgaaCGCCAUCccUCggaCGGUCg -3'
miRNA:   3'- -CGAGCU--------GGCU---GCGGUAGu-AGa--GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 104948 0.66 0.967292
Target:  5'- gGCgUCGGCgCGGCGCCGgc--CUCGuGUCu -3'
miRNA:   3'- -CG-AGCUG-GCUGCGGUaguaGAGC-CAG- -5'
9034 3' -55.1 NC_002512.2 + 25045 0.66 0.967292
Target:  5'- ---gGACCGAcCGCCGUCGUCcuccCGGa- -3'
miRNA:   3'- cgagCUGGCU-GCGGUAGUAGa---GCCag -5'
9034 3' -55.1 NC_002512.2 + 108736 0.66 0.977854
Target:  5'- cCUgGGCCG-CgGCCggCGUCUCGGcCg -3'
miRNA:   3'- cGAgCUGGCuG-CGGuaGUAGAGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 130617 0.66 0.972944
Target:  5'- uGCUCGACCccGCGuCCggCGUcCUCGGg- -3'
miRNA:   3'- -CGAGCUGGc-UGC-GGuaGUA-GAGCCag -5'
9034 3' -55.1 NC_002512.2 + 83279 0.66 0.972944
Target:  5'- -gUCGGCagcaGAggcgucuggggcCGCCGuUCGUCUCGGUUg -3'
miRNA:   3'- cgAGCUGg---CU------------GCGGU-AGUAGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 116957 0.66 0.974744
Target:  5'- gGCUCGcgcgccaccgggccGCCGACGCCc-CGUC-CGGg- -3'
miRNA:   3'- -CGAGC--------------UGGCUGCGGuaGUAGaGCCag -5'
9034 3' -55.1 NC_002512.2 + 38413 0.66 0.972944
Target:  5'- cGCU-GuCCGGCGCC-UCGUaCUCGGcCc -3'
miRNA:   3'- -CGAgCuGGCUGCGGuAGUA-GAGCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.