miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9034 3' -55.1 NC_002512.2 + 2189 0.77 0.520132
Target:  5'- cGCgccccCG-CCGcCGUCGUCGUCUCGGUCg -3'
miRNA:   3'- -CGa----GCuGGCuGCGGUAGUAGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 3181 0.7 0.87028
Target:  5'- aCUCGuuucgcgUCGACGUCGUCGUCgaacgugUCGGUCg -3'
miRNA:   3'- cGAGCu------GGCUGCGGUAGUAG-------AGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 3960 0.66 0.972944
Target:  5'- -gUCG-UCGuCGUCGUCGUCcccUCGGUCg -3'
miRNA:   3'- cgAGCuGGCuGCGGUAGUAG---AGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 4556 0.66 0.977854
Target:  5'- gGCgCGACCGACGgCugcggCGUCUgGGg- -3'
miRNA:   3'- -CGaGCUGGCUGCgGua---GUAGAgCCag -5'
9034 3' -55.1 NC_002512.2 + 6047 0.7 0.86668
Target:  5'- cCUCGGCCuccuccuuccccuccGacGCGCCGUCGUCgucccggCGGUCg -3'
miRNA:   3'- cGAGCUGG---------------C--UGCGGUAGUAGa------GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 9117 0.66 0.977854
Target:  5'- -aUCGACa-ACGuaggaCCGUgGUCUCGGUCa -3'
miRNA:   3'- cgAGCUGgcUGC-----GGUAgUAGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 11997 0.67 0.957323
Target:  5'- cGCUCGACgacgCGGcCGCCG--AUCUCGGa- -3'
miRNA:   3'- -CGAGCUG----GCU-GCGGUagUAGAGCCag -5'
9034 3' -55.1 NC_002512.2 + 16656 0.68 0.919074
Target:  5'- --cCGGCCGGCGCCGUUggCggccacgacccggCGGUCc -3'
miRNA:   3'- cgaGCUGGCUGCGGUAGuaGa------------GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 20449 0.68 0.931607
Target:  5'- aGC-CGGCCGAUGaCgGUCAUCcgcgCGGUg -3'
miRNA:   3'- -CGaGCUGGCUGC-GgUAGUAGa---GCCAg -5'
9034 3' -55.1 NC_002512.2 + 20671 0.66 0.979834
Target:  5'- uGUUUGACCGugacgggccgcagGCGCCg----CUCGGUCu -3'
miRNA:   3'- -CGAGCUGGC-------------UGCGGuaguaGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 21763 0.67 0.960851
Target:  5'- uGC-CGAuaaCCGugGCCG-CGUCUCuGGUUu -3'
miRNA:   3'- -CGaGCU---GGCugCGGUaGUAGAG-CCAG- -5'
9034 3' -55.1 NC_002512.2 + 24375 0.66 0.978081
Target:  5'- cGCUCGAagucgucguccuccgCGACGCCGUCGUC-CGc-- -3'
miRNA:   3'- -CGAGCUg--------------GCUGCGGUAGUAGaGCcag -5'
9034 3' -55.1 NC_002512.2 + 24872 0.66 0.977625
Target:  5'- gGCccCGACCGAgGCgCGUCGUUUcgcccccgccuucCGGUCc -3'
miRNA:   3'- -CGa-GCUGGCUgCG-GUAGUAGA-------------GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 25045 0.66 0.967292
Target:  5'- ---gGACCGAcCGCCGUCGUCcuccCGGa- -3'
miRNA:   3'- cgagCUGGCU-GCGGUAGUAGa---GCCag -5'
9034 3' -55.1 NC_002512.2 + 25873 0.66 0.979406
Target:  5'- -gUCGGCCcgcacgaagccgaaGAgGCgGUCGUaCUCGGUCc -3'
miRNA:   3'- cgAGCUGG--------------CUgCGgUAGUA-GAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 27763 0.67 0.964173
Target:  5'- gGCcgaGACCGGCGCCAcCAgCUgacgaggacgCGGUCg -3'
miRNA:   3'- -CGag-CUGGCUGCGGUaGUaGA----------GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 28278 0.68 0.935973
Target:  5'- cGCUCGgcGCUGGCGgagaacuUCAUCcgCUCGGUg -3'
miRNA:   3'- -CGAGC--UGGCUGC-------GGUAGuaGAGCCAg -5'
9034 3' -55.1 NC_002512.2 + 28585 0.7 0.848716
Target:  5'- aGCUgaucCGAgCGGUGCgCGUCAUCUCGGUg -3'
miRNA:   3'- -CGA----GCUgGCUGCG-GUAGUAGAGCCAg -5'
9034 3' -55.1 NC_002512.2 + 35879 0.69 0.904039
Target:  5'- -aUCGACCGugGUacg---CUCGGUCg -3'
miRNA:   3'- cgAGCUGGCugCGguaguaGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 38413 0.66 0.972944
Target:  5'- cGCU-GuCCGGCGCC-UCGUaCUCGGcCc -3'
miRNA:   3'- -CGAgCuGGCUGCGGuAGUA-GAGCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.