miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9034 3' -55.1 NC_002512.2 + 227041 0.69 0.897858
Target:  5'- aGCUCGuGCCGcagcugccCGCCGUCGUC-CGGg- -3'
miRNA:   3'- -CGAGC-UGGCu-------GCGGUAGUAGaGCCag -5'
9034 3' -55.1 NC_002512.2 + 226786 0.82 0.298308
Target:  5'- uCUCGGgCGACGCCGUgGUCUCGGcCg -3'
miRNA:   3'- cGAGCUgGCUGCGGUAgUAGAGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 225600 0.71 0.816458
Target:  5'- cUUCGACCaGCugGCCGUCGUCgucCGGUCc -3'
miRNA:   3'- cGAGCUGGcUG--CGGUAGUAGa--GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 224443 0.71 0.807981
Target:  5'- cGCUCuacgcGCCGACG-CGUgGUCUCGGUg -3'
miRNA:   3'- -CGAGc----UGGCUGCgGUAgUAGAGCCAg -5'
9034 3' -55.1 NC_002512.2 + 223638 0.76 0.548949
Target:  5'- uGCUCGGCgGGC-UCGUCAugcUCUCGGUCu -3'
miRNA:   3'- -CGAGCUGgCUGcGGUAGU---AGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 222190 0.7 0.870994
Target:  5'- gGCcgCGGCCGGCGUCGUCcguuUCUUcGUCg -3'
miRNA:   3'- -CGa-GCUGGCUGCGGUAGu---AGAGcCAG- -5'
9034 3' -55.1 NC_002512.2 + 218558 0.67 0.949629
Target:  5'- cCUCcGCCGGCGuCCGUCGcgucggccaucUCUCGGa- -3'
miRNA:   3'- cGAGcUGGCUGC-GGUAGU-----------AGAGCCag -5'
9034 3' -55.1 NC_002512.2 + 218395 0.66 0.970214
Target:  5'- cCUCGucguccucuCCGuCGUCGUCGUCcucgCGGUCu -3'
miRNA:   3'- cGAGCu--------GGCuGCGGUAGUAGa---GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 216676 0.66 0.970214
Target:  5'- aGCU--GCaCGuACGCgaaguaCAUCGUCUCGGUCa -3'
miRNA:   3'- -CGAgcUG-GC-UGCG------GUAGUAGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 216208 0.68 0.945456
Target:  5'- cGCcgCGGCCGuCGCC-UCGUC-CGGg- -3'
miRNA:   3'- -CGa-GCUGGCuGCGGuAGUAGaGCCag -5'
9034 3' -55.1 NC_002512.2 + 213604 0.68 0.926542
Target:  5'- -aUCGGCCGcCGUCG-CGUC-CGGUCc -3'
miRNA:   3'- cgAGCUGGCuGCGGUaGUAGaGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 209952 0.69 0.89146
Target:  5'- uGCUCGACCgGGCGCgGgUCcUCaaGGUCg -3'
miRNA:   3'- -CGAGCUGG-CUGCGgU-AGuAGagCCAG- -5'
9034 3' -55.1 NC_002512.2 + 203960 0.66 0.975488
Target:  5'- cGC-CGGCCGACGCaCAUCGaccUCaUGGa- -3'
miRNA:   3'- -CGaGCUGGCUGCG-GUAGU---AGaGCCag -5'
9034 3' -55.1 NC_002512.2 + 203608 0.71 0.840913
Target:  5'- -aUCGACCGGCGugaaCCAU-AUCUcCGGUCg -3'
miRNA:   3'- cgAGCUGGCUGC----GGUAgUAGA-GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 202140 0.67 0.960851
Target:  5'- uCUCGGCCGcCGCCG-CGgggCgggUGGUCg -3'
miRNA:   3'- cGAGCUGGCuGCGGUaGUa--Ga--GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 201711 0.67 0.949629
Target:  5'- -aUCGGCggCGGCGUCGUCGUCgCGGg- -3'
miRNA:   3'- cgAGCUG--GCUGCGGUAGUAGaGCCag -5'
9034 3' -55.1 NC_002512.2 + 198080 0.7 0.870994
Target:  5'- cCUCGACCG-CGCCccggCGUCUCcccGUCg -3'
miRNA:   3'- cGAGCUGGCuGCGGua--GUAGAGc--CAG- -5'
9034 3' -55.1 NC_002512.2 + 196637 0.68 0.931607
Target:  5'- --gUGGCCGACGCCGUgUGUCUgGGg- -3'
miRNA:   3'- cgaGCUGGCUGCGGUA-GUAGAgCCag -5'
9034 3' -55.1 NC_002512.2 + 195806 0.73 0.725898
Target:  5'- aUUUGGCCG-CGCCgGUCcauUCUCGGUCa -3'
miRNA:   3'- cGAGCUGGCuGCGG-UAGu--AGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 195397 0.67 0.949629
Target:  5'- gGgUCGACCGGgaGCuCGUCuUCUCGGg- -3'
miRNA:   3'- -CgAGCUGGCUg-CG-GUAGuAGAGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.