miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9034 3' -55.1 NC_002512.2 + 76692 0.66 0.980046
Target:  5'- cGCUCGuCUGAUGUCGUCGg--CGG-Cg -3'
miRNA:   3'- -CGAGCuGGCUGCGGUAGUagaGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 186299 0.66 0.970214
Target:  5'- cCUCGuCCgcGACGCCGUgGUCaUCGG-Ca -3'
miRNA:   3'- cGAGCuGG--CUGCGGUAgUAG-AGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 218395 0.66 0.970214
Target:  5'- cCUCGucguccucuCCGuCGUCGUCGUCcucgCGGUCu -3'
miRNA:   3'- cGAGCu--------GGCuGCGGUAGUAGa---GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 151240 1.12 0.003897
Target:  5'- gGCUCGACCGACGCCAUCAUCUCGGUCg -3'
miRNA:   3'- -CGAGCUGGCUGCGGUAGUAGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 172260 0.66 0.977854
Target:  5'- uGCUCGcCUcACGCCcg---CUCGGUCg -3'
miRNA:   3'- -CGAGCuGGcUGCGGuaguaGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 92989 0.66 0.977854
Target:  5'- cGCcCGACCugGugGCC---GUCUCGGUg -3'
miRNA:   3'- -CGaGCUGG--CugCGGuagUAGAGCCAg -5'
9034 3' -55.1 NC_002512.2 + 169031 0.66 0.975488
Target:  5'- gGCguccgCGAgCGGCGCCggCAUCuccUCGGg- -3'
miRNA:   3'- -CGa----GCUgGCUGCGGuaGUAG---AGCCag -5'
9034 3' -55.1 NC_002512.2 + 112823 0.66 0.975488
Target:  5'- --aCGGCCacccgguugaggGACacgGCCGUCAUCUCGG-Cg -3'
miRNA:   3'- cgaGCUGG------------CUG---CGGUAGUAGAGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 113174 0.66 0.973984
Target:  5'- gGCgggacgCGACCGGCgucGCCGUCcgCUCcgcgagcgggagccgGGUCc -3'
miRNA:   3'- -CGa-----GCUGGCUG---CGGUAGuaGAG---------------CCAG- -5'
9034 3' -55.1 NC_002512.2 + 216676 0.66 0.970214
Target:  5'- aGCU--GCaCGuACGCgaaguaCAUCGUCUCGGUCa -3'
miRNA:   3'- -CGAgcUG-GC-UGCG------GUAGUAGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 94563 0.66 0.972944
Target:  5'- gGCgCGGCUGACGCCGac--CUCGGg- -3'
miRNA:   3'- -CGaGCUGGCUGCGGUaguaGAGCCag -5'
9034 3' -55.1 NC_002512.2 + 96092 0.66 0.974493
Target:  5'- gGCgCGACCGucguccccgccgcCGCCGUCGUCgUCGucGUCg -3'
miRNA:   3'- -CGaGCUGGCu------------GCGGUAGUAG-AGC--CAG- -5'
9034 3' -55.1 NC_002512.2 + 9117 0.66 0.977854
Target:  5'- -aUCGACa-ACGuaggaCCGUgGUCUCGGUCa -3'
miRNA:   3'- cgAGCUGgcUGC-----GGUAgUAGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 72213 0.66 0.972944
Target:  5'- uGCUcCGGCC-ACGUCGcCAUaUUCGGUCa -3'
miRNA:   3'- -CGA-GCUGGcUGCGGUaGUA-GAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 188632 0.66 0.977854
Target:  5'- cGCUCGggccgcaagggcGCCGGCGgcggcggcggcCCGUCGUCcgaccgcggCGGUCu -3'
miRNA:   3'- -CGAGC------------UGGCUGC-----------GGUAGUAGa--------GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 182622 0.66 0.974744
Target:  5'- gGCUCGgugGCCGcgcgaucuucuccaGCGCCugCGUCUCGGcCu -3'
miRNA:   3'- -CGAGC---UGGC--------------UGCGGuaGUAGAGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 191192 0.66 0.972944
Target:  5'- --gCGACCGucucCuCCGUCggCUCGGUCu -3'
miRNA:   3'- cgaGCUGGCu---GcGGUAGuaGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 162163 0.66 0.970214
Target:  5'- cGC-CGACCGcgaaaGCGgCcgCGUCcgUCGGUCa -3'
miRNA:   3'- -CGaGCUGGC-----UGCgGuaGUAG--AGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 178590 0.66 0.977854
Target:  5'- gGCUCuucagucuGGCCGcCGCCGa---CUCGGUCg -3'
miRNA:   3'- -CGAG--------CUGGCuGCGGUaguaGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 203960 0.66 0.975488
Target:  5'- cGC-CGGCCGACGCaCAUCGaccUCaUGGa- -3'
miRNA:   3'- -CGaGCUGGCUGCG-GUAGU---AGaGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.