Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9035 | 5' | -56.4 | NC_002512.2 | + | 212010 | 0.68 | 0.905492 |
Target: 5'- gCCUAUCACGUCCC-CCG-GGCc--- -3' miRNA: 3'- aGGAUAGUGCGGGGaGGCaCUGcacc -5' |
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9035 | 5' | -56.4 | NC_002512.2 | + | 226410 | 0.68 | 0.911322 |
Target: 5'- aCCcGUCGCGUCCgcguCUCCG-GACGcGGg -3' miRNA: 3'- aGGaUAGUGCGGG----GAGGCaCUGCaCC- -5' |
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9035 | 5' | -56.4 | NC_002512.2 | + | 206029 | 0.67 | 0.941725 |
Target: 5'- aCCUGauaCACGuCCCCuUCCGUcgUGUGGa -3' miRNA: 3'- aGGAUa--GUGC-GGGG-AGGCAcuGCACC- -5' |
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9035 | 5' | -56.4 | NC_002512.2 | + | 193919 | 0.66 | 0.953997 |
Target: 5'- ---gAUCGCGUCCCggacUCCGcUGACGgccgGGg -3' miRNA: 3'- aggaUAGUGCGGGG----AGGC-ACUGCa---CC- -5' |
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9035 | 5' | -56.4 | NC_002512.2 | + | 60259 | 0.66 | 0.961129 |
Target: 5'- aCCUAUCAgGCCCCUCUcauauagGACu--- -3' miRNA: 3'- aGGAUAGUgCGGGGAGGca-----CUGcacc -5' |
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9035 | 5' | -56.4 | NC_002512.2 | + | 165781 | 0.66 | 0.961129 |
Target: 5'- cUCCUG-CGCGCCCgUCgagGACGUcuGGg -3' miRNA: 3'- -AGGAUaGUGCGGGgAGgcaCUGCA--CC- -5' |
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9035 | 5' | -56.4 | NC_002512.2 | + | 205425 | 0.66 | 0.961129 |
Target: 5'- cUCCUAUgCuaagagGCGCCCCaCCGUG-CGUucGGa -3' miRNA: 3'- -AGGAUA-G------UGCGGGGaGGCACuGCA--CC- -5' |
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9035 | 5' | -56.4 | NC_002512.2 | + | 185449 | 0.66 | 0.961129 |
Target: 5'- gUCCUGUC-CGCCCucugCUCCuucGcCGUGGu -3' miRNA: 3'- -AGGAUAGuGCGGG----GAGGca-CuGCACC- -5' |
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9035 | 5' | -56.4 | NC_002512.2 | + | 151136 | 1.1 | 0.004157 |
Target: 5'- cUCCUAUCACGCCCCUCCGUGACGUGGu -3' miRNA: 3'- -AGGAUAGUGCGGGGAGGCACUGCACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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