miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9036 3' -54.7 NC_002512.2 + 119951 0.66 0.974414
Target:  5'- cACgCggUGGACUucGugGCgCUGggGCCg -3'
miRNA:   3'- -UGaGuuGCCUGA--CugUGgGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 132940 0.66 0.974414
Target:  5'- --aCGACGGuCggcgcGACGCCCCGcuGCUu -3'
miRNA:   3'- ugaGUUGCCuGa----CUGUGGGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 221649 0.66 0.974414
Target:  5'- uGCUCuACGGcGC-GACGCUC-GAGGCCu -3'
miRNA:   3'- -UGAGuUGCC-UGaCUGUGGGgCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 162146 0.66 0.974414
Target:  5'- gGCUC-GCGaGGCcGGCACgCCGAccgcgaaagcGGCCg -3'
miRNA:   3'- -UGAGuUGC-CUGaCUGUGgGGCU----------UCGG- -5'
9036 3' -54.7 NC_002512.2 + 18295 0.66 0.973641
Target:  5'- uCUCGGCGGAgcagaaggggaugggGACGCCCCGcauGCg -3'
miRNA:   3'- uGAGUUGCCUga-------------CUGUGGGGCuu-CGg -5'
9036 3' -54.7 NC_002512.2 + 14447 0.66 0.972852
Target:  5'- cGCUCccGgGGGCUGACgaucuugaugaaggcGCCCUuGGGCCa -3'
miRNA:   3'- -UGAGu-UgCCUGACUG---------------UGGGGcUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 13459 0.66 0.971773
Target:  5'- gGCggCGGCGaGcCUGGCGuCCCCGGaccugcugcGGCCg -3'
miRNA:   3'- -UGa-GUUGC-CuGACUGU-GGGGCU---------UCGG- -5'
9036 3' -54.7 NC_002512.2 + 129849 0.66 0.971773
Target:  5'- uCUCAGCGcccGGCgGAggaGCCCCuuGAGGCCg -3'
miRNA:   3'- uGAGUUGC---CUGaCUg--UGGGG--CUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 77145 0.66 0.971773
Target:  5'- -gUCGGgGGACcuuccGACcgcCCCCGAAGCUu -3'
miRNA:   3'- ugAGUUgCCUGa----CUGu--GGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 32411 0.66 0.971773
Target:  5'- --cCGAUGGGCU----CCCCGAAGCUg -3'
miRNA:   3'- ugaGUUGCCUGAcuguGGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 190534 0.66 0.971773
Target:  5'- cCUCcACGGACUc---UCCUGAGGCCa -3'
miRNA:   3'- uGAGuUGCCUGAcuguGGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 150908 0.66 0.971773
Target:  5'- uCUCGgccGCGGAC-GACGCUaaguCCG-AGCCg -3'
miRNA:   3'- uGAGU---UGCCUGaCUGUGG----GGCuUCGG- -5'
9036 3' -54.7 NC_002512.2 + 22892 0.66 0.971773
Target:  5'- uGCUgAccccGCGGGCcacgGGCAUCCCGGgcGGCUu -3'
miRNA:   3'- -UGAgU----UGCCUGa---CUGUGGGGCU--UCGG- -5'
9036 3' -54.7 NC_002512.2 + 150662 0.66 0.971498
Target:  5'- aGCUCGagccucgagguccGCGGGCgcggcgGuCGCCCCGAcGGaCCg -3'
miRNA:   3'- -UGAGU-------------UGCCUGa-----CuGUGGGGCU-UC-GG- -5'
9036 3' -54.7 NC_002512.2 + 9548 0.67 0.968941
Target:  5'- gGCgUUGACGaGGCcguccGGCcCCCCGGAGCCc -3'
miRNA:   3'- -UG-AGUUGC-CUGa----CUGuGGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 47087 0.67 0.968941
Target:  5'- cGCUCucgGGACUGACgaacgcgcagacGCUCCGGAcGCUg -3'
miRNA:   3'- -UGAGuugCCUGACUG------------UGGGGCUU-CGG- -5'
9036 3' -54.7 NC_002512.2 + 73033 0.67 0.968941
Target:  5'- gGCgUAGCaGGugUGGCAgcagcggcCCCCGcAGGCCu -3'
miRNA:   3'- -UGaGUUG-CCugACUGU--------GGGGC-UUCGG- -5'
9036 3' -54.7 NC_002512.2 + 118769 0.67 0.968941
Target:  5'- gACcCcGCGGGC-GGCGCCuCCGccGCCg -3'
miRNA:   3'- -UGaGuUGCCUGaCUGUGG-GGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 41776 0.67 0.968941
Target:  5'- --aCAGCGu-CUGugAUCCCGucGCCg -3'
miRNA:   3'- ugaGUUGCcuGACugUGGGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 221158 0.67 0.967148
Target:  5'- -gUCGACGGGCgGGCgcgcgcggccgaccgACCUCGGAGUg -3'
miRNA:   3'- ugAGUUGCCUGaCUG---------------UGGGGCUUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.