Results 21 - 40 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9036 | 3' | -54.7 | NC_002512.2 | + | 124516 | 0.66 | 0.97915 |
Target: 5'- -gUCGAUGGGuCUGA-ACCCCGccGUCa -3' miRNA: 3'- ugAGUUGCCU-GACUgUGGGGCuuCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 140189 | 0.66 | 0.97915 |
Target: 5'- uGCUCAAgcacaucgaguuCGGcCUGccGCucuCCCCGAGGCa -3' miRNA: 3'- -UGAGUU------------GCCuGAC--UGu--GGGGCUUCGg -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 45285 | 0.66 | 0.97893 |
Target: 5'- cGCUCGucucgcgggucggACGGACcGcCGCCCUGccGGCCc -3' miRNA: 3'- -UGAGU-------------UGCCUGaCuGUGGGGCu-UCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 64490 | 0.66 | 0.97893 |
Target: 5'- cCUCc-UGGACcaUGAgCGCCCCGAccuugcgGGCCa -3' miRNA: 3'- uGAGuuGCCUG--ACU-GUGGGGCU-------UCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 227884 | 0.66 | 0.976871 |
Target: 5'- gGCUCAGgcGACgcgGGCGagUCCGAGGCCg -3' miRNA: 3'- -UGAGUUgcCUGa--CUGUg-GGGCUUCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 221033 | 0.66 | 0.976871 |
Target: 5'- cAC-CAACGGGgUGcCGCCCgGcagcGAGCCc -3' miRNA: 3'- -UGaGUUGCCUgACuGUGGGgC----UUCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 103387 | 0.66 | 0.976871 |
Target: 5'- cGC-CGAgGcGCUcGCGCUCCGggGCCa -3' miRNA: 3'- -UGaGUUgCcUGAcUGUGGGGCuuCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 208797 | 0.66 | 0.976871 |
Target: 5'- ---aGACGG-CgGuCGCCCCGGAGCg -3' miRNA: 3'- ugagUUGCCuGaCuGUGGGGCUUCGg -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 202358 | 0.66 | 0.976871 |
Target: 5'- gGCUCGAuUGGuCUGAgcCGCCuCCGAcGCUg -3' miRNA: 3'- -UGAGUU-GCCuGACU--GUGG-GGCUuCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 50397 | 0.66 | 0.976871 |
Target: 5'- --aCGACGauGGCgacGACGCCgCCGAAGCa -3' miRNA: 3'- ugaGUUGC--CUGa--CUGUGG-GGCUUCGg -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 66203 | 0.66 | 0.976871 |
Target: 5'- cAUUCGGacaGGGCgagGACGuCCCCGGccAGCUu -3' miRNA: 3'- -UGAGUUg--CCUGa--CUGU-GGGGCU--UCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 155023 | 0.66 | 0.976871 |
Target: 5'- ---gAGCGGAaagaugaUGACGCCCgCGGgaGGCCc -3' miRNA: 3'- ugagUUGCCUg------ACUGUGGG-GCU--UCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 100311 | 0.66 | 0.976871 |
Target: 5'- --gCGACgGGGCcGACGUCCCGgcGCCu -3' miRNA: 3'- ugaGUUG-CCUGaCUGUGGGGCuuCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 225988 | 0.66 | 0.976633 |
Target: 5'- gGCUCGAacgucguCGGAUUGACcgACCCaacuGAcGCCg -3' miRNA: 3'- -UGAGUU-------GCCUGACUG--UGGGg---CUuCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 128537 | 0.66 | 0.976633 |
Target: 5'- gUUCGugGGGCUGAaaugucacaugucCACCUuCGAcGGCCu -3' miRNA: 3'- uGAGUugCCUGACU-------------GUGGG-GCU-UCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 35109 | 0.66 | 0.975419 |
Target: 5'- cGCUCGgaguucccguggacGCGGACcaggucccgacUGGCGCCCaCGGuggagaucggcaccAGCCg -3' miRNA: 3'- -UGAGU--------------UGCCUG-----------ACUGUGGG-GCU--------------UCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 221649 | 0.66 | 0.974414 |
Target: 5'- uGCUCuACGGcGC-GACGCUC-GAGGCCu -3' miRNA: 3'- -UGAGuUGCC-UGaCUGUGGGgCUUCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 224015 | 0.66 | 0.974414 |
Target: 5'- gACgaguCGGAC-GACGCCCgggacuccgaCGggGCCg -3' miRNA: 3'- -UGaguuGCCUGaCUGUGGG----------GCuuCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 162146 | 0.66 | 0.974414 |
Target: 5'- gGCUC-GCGaGGCcGGCACgCCGAccgcgaaagcGGCCg -3' miRNA: 3'- -UGAGuUGC-CUGaCUGUGgGGCU----------UCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 29172 | 0.66 | 0.974414 |
Target: 5'- gAC-CGcCGGGC-GGCAgCCCGAcGCCa -3' miRNA: 3'- -UGaGUuGCCUGaCUGUgGGGCUuCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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