Results 21 - 40 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9036 | 3' | -54.7 | NC_002512.2 | + | 148677 | 0.72 | 0.79385 |
Target: 5'- --cCAGCGGGCcGugGCCCuCGucGCCg -3' miRNA: 3'- ugaGUUGCCUGaCugUGGG-GCuuCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 34349 | 0.72 | 0.801752 |
Target: 5'- aGCUgAGCGGGCggagGAggUACCCCGAgaaguaguaggcgAGCCc -3' miRNA: 3'- -UGAgUUGCCUGa---CU--GUGGGGCU-------------UCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 128751 | 0.72 | 0.802623 |
Target: 5'- cGCUCAAggUGGGCaagGACACCCucgaCGAGGCg -3' miRNA: 3'- -UGAGUU--GCCUGa--CUGUGGG----GCUUCGg -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 2233 | 0.72 | 0.811248 |
Target: 5'- cGCUCuuccucCGGACccgGGCGCUCCGucGCCu -3' miRNA: 3'- -UGAGuu----GCCUGa--CUGUGGGGCuuCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 94651 | 0.72 | 0.811248 |
Target: 5'- --aCGACGGcCUcgaGGCGgCCCGggGCCg -3' miRNA: 3'- ugaGUUGCCuGA---CUGUgGGGCuuCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 108425 | 0.72 | 0.811248 |
Target: 5'- gACggCGGCGGGCgcggGGCggaccccucaggGCUCCGggGCCg -3' miRNA: 3'- -UGa-GUUGCCUGa---CUG------------UGGGGCuuCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 208416 | 0.71 | 0.819719 |
Target: 5'- uGCUCuACGGGCgc-CGCuCCCGgcGCCg -3' miRNA: 3'- -UGAGuUGCCUGacuGUG-GGGCuuCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 161514 | 0.71 | 0.819719 |
Target: 5'- cGCUgcGCGGAC-GGCACCgCCG-AGCCc -3' miRNA: 3'- -UGAguUGCCUGaCUGUGG-GGCuUCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 44335 | 0.71 | 0.819719 |
Target: 5'- cCUCGACGGcC--ACGCCgCGggGCCg -3' miRNA: 3'- uGAGUUGCCuGacUGUGGgGCuuCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 207740 | 0.71 | 0.819719 |
Target: 5'- -gUCGGCGGGg-GACGCUCCGggGUg -3' miRNA: 3'- ugAGUUGCCUgaCUGUGGGGCuuCGg -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 24203 | 0.71 | 0.828027 |
Target: 5'- gUUCGACaGGACgGugACgCCGGAGCUg -3' miRNA: 3'- uGAGUUG-CCUGaCugUGgGGCUUCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 117396 | 0.71 | 0.836165 |
Target: 5'- uACUCGuCGGGCUGcgcgcACACgCUGGAGUCg -3' miRNA: 3'- -UGAGUuGCCUGAC-----UGUGgGGCUUCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 13289 | 0.71 | 0.836165 |
Target: 5'- aACUCGGucCGGAUcGACACCCa-GGGCCu -3' miRNA: 3'- -UGAGUU--GCCUGaCUGUGGGgcUUCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 96676 | 0.71 | 0.836165 |
Target: 5'- cGCUgGGCGGAC-GACGUCCCGAAGa- -3' miRNA: 3'- -UGAgUUGCCUGaCUGUGGGGCUUCgg -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 16864 | 0.71 | 0.836165 |
Target: 5'- aGC-CGGCGGAC--GCACCUCGAgagGGCCc -3' miRNA: 3'- -UGaGUUGCCUGacUGUGGGGCU---UCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 163538 | 0.71 | 0.836165 |
Target: 5'- -aUCAACGGugcuCUGcagaACAUCCuCGAGGCCu -3' miRNA: 3'- ugAGUUGCCu---GAC----UGUGGG-GCUUCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 64232 | 0.71 | 0.836165 |
Target: 5'- cCUCGgccuGCGGGaaGGC-CCCCGAAGCg -3' miRNA: 3'- uGAGU----UGCCUgaCUGuGGGGCUUCGg -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 81097 | 0.71 | 0.843338 |
Target: 5'- uGCcgCAGCGGuacgagucGCUGACGCCCaggucguCGAAGUCg -3' miRNA: 3'- -UGa-GUUGCC--------UGACUGUGGG-------GCUUCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 117821 | 0.71 | 0.843338 |
Target: 5'- gGCUCGcgGCGGACcGACGUCCUggacacgGAGGCCa -3' miRNA: 3'- -UGAGU--UGCCUGaCUGUGGGG-------CUUCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 137794 | 0.71 | 0.844126 |
Target: 5'- cGCUCGGCGGGCc-GCGCgUCCGGcGGCCg -3' miRNA: 3'- -UGAGUUGCCUGacUGUG-GGGCU-UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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