miRNA display CGI


Results 1 - 20 of 206 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9036 3' -54.7 NC_002512.2 + 150874 1.12 0.003893
Target:  5'- cACUCAACGGACUGACACCCCGAAGCCa -3'
miRNA:   3'- -UGAGUUGCCUGACUGUGGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 112932 0.8 0.379902
Target:  5'- aGCUCGuuGCGGA-UGGCGCCCCGGucgAGCCc -3'
miRNA:   3'- -UGAGU--UGCCUgACUGUGGGGCU---UCGG- -5'
9036 3' -54.7 NC_002512.2 + 107606 0.77 0.521952
Target:  5'- gGCUCGcugACGGGCUccagGACGuCCCCGcGGCCg -3'
miRNA:   3'- -UGAGU---UGCCUGA----CUGU-GGGGCuUCGG- -5'
9036 3' -54.7 NC_002512.2 + 8848 0.77 0.53157
Target:  5'- gGCUCGcugcCGGGC-GGCACCCCGuugguGGCCg -3'
miRNA:   3'- -UGAGUu---GCCUGaCUGUGGGGCu----UCGG- -5'
9036 3' -54.7 NC_002512.2 + 91358 0.77 0.541251
Target:  5'- uGCUCGACGGGCUGGacgacgcgACCCUGAAGaCg -3'
miRNA:   3'- -UGAGUUGCCUGACUg-------UGGGGCUUCgG- -5'
9036 3' -54.7 NC_002512.2 + 44454 0.76 0.559801
Target:  5'- gACagGACGGcCUcgaagaccuccagGGCGCCCCGggGCCg -3'
miRNA:   3'- -UGagUUGCCuGA-------------CUGUGGGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 18690 0.76 0.570623
Target:  5'- aGCUCGugGGcgGCgGGCACCCCGAgcagGGCg -3'
miRNA:   3'- -UGAGUugCC--UGaCUGUGGGGCU----UCGg -5'
9036 3' -54.7 NC_002512.2 + 129975 0.76 0.600365
Target:  5'- cUUCGGCGGGCccccGGCGCCCuCGAcgGGCCg -3'
miRNA:   3'- uGAGUUGCCUGa---CUGUGGG-GCU--UCGG- -5'
9036 3' -54.7 NC_002512.2 + 134698 0.75 0.630307
Target:  5'- cGCUCGcCGGGCUgcccGACAUCCUGggGgCCg -3'
miRNA:   3'- -UGAGUuGCCUGA----CUGUGGGGCuuC-GG- -5'
9036 3' -54.7 NC_002512.2 + 75521 0.75 0.650287
Target:  5'- cCUCGACGuuGACgGGCACCCuCGAcGCCg -3'
miRNA:   3'- uGAGUUGC--CUGaCUGUGGG-GCUuCGG- -5'
9036 3' -54.7 NC_002512.2 + 153370 0.74 0.66026
Target:  5'- gGCUgGGCGGcgGCUGGCGgUCCGGAGCg -3'
miRNA:   3'- -UGAgUUGCC--UGACUGUgGGGCUUCGg -5'
9036 3' -54.7 NC_002512.2 + 112473 0.74 0.699857
Target:  5'- cGCUCGgaGCGGA-UGACGCCCUGGuccucgauGCCg -3'
miRNA:   3'- -UGAGU--UGCCUgACUGUGGGGCUu-------CGG- -5'
9036 3' -54.7 NC_002512.2 + 102044 0.73 0.719363
Target:  5'- aGCUucgCGGCGGACgccgccGACGaccUCCCGGAGCCg -3'
miRNA:   3'- -UGA---GUUGCCUGa-----CUGU---GGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 226274 0.73 0.726126
Target:  5'- aGCUCAcgaccGCGGGCUcugcgccuguccccGAgAcCCCCGggGCCu -3'
miRNA:   3'- -UGAGU-----UGCCUGA--------------CUgU-GGGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 74909 0.73 0.738584
Target:  5'- --gCGACGGACgcgGAgGCCCgGAGGCg -3'
miRNA:   3'- ugaGUUGCCUGa--CUgUGGGgCUUCGg -5'
9036 3' -54.7 NC_002512.2 + 135116 0.73 0.748066
Target:  5'- uGCUC--CGGACggcgcGACGCUCCGAGGgCCg -3'
miRNA:   3'- -UGAGuuGCCUGa----CUGUGGGGCUUC-GG- -5'
9036 3' -54.7 NC_002512.2 + 65419 0.73 0.748066
Target:  5'- aGCUCGGCGGGCgGucguCGCCCCc--GCCg -3'
miRNA:   3'- -UGAGUUGCCUGaCu---GUGGGGcuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 205656 0.73 0.757451
Target:  5'- -gUCGGCGGGCccGACGCCUCGGacAGCUc -3'
miRNA:   3'- ugAGUUGCCUGa-CUGUGGGGCU--UCGG- -5'
9036 3' -54.7 NC_002512.2 + 28430 0.72 0.784938
Target:  5'- gGC-CGACGGg--GAcCACCUCGAGGCCg -3'
miRNA:   3'- -UGaGUUGCCugaCU-GUGGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 148677 0.72 0.79385
Target:  5'- --cCAGCGGGCcGugGCCCuCGucGCCg -3'
miRNA:   3'- ugaGUUGCCUGaCugUGGG-GCuuCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.