miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9036 3' -54.7 NC_002512.2 + 2233 0.72 0.811248
Target:  5'- cGCUCuuccucCGGACccgGGCGCUCCGucGCCu -3'
miRNA:   3'- -UGAGuu----GCCUGa--CUGUGGGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 2905 0.67 0.959243
Target:  5'- gACUCGAUGGccCUGAcCACCuuGGacagcuucuuGGCCu -3'
miRNA:   3'- -UGAGUUGCCu-GACU-GUGGggCU----------UCGG- -5'
9036 3' -54.7 NC_002512.2 + 2975 0.66 0.981258
Target:  5'- uCUC-GCGGGCcuccuUGGC-CCCCGcguGGCCc -3'
miRNA:   3'- uGAGuUGCCUG-----ACUGuGGGGCu--UCGG- -5'
9036 3' -54.7 NC_002512.2 + 3189 0.69 0.918409
Target:  5'- cGCUCGacgccgccGCGGGC-GACGgCCCGgcGCUc -3'
miRNA:   3'- -UGAGU--------UGCCUGaCUGUgGGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 4176 0.68 0.929063
Target:  5'- gGCUC-GCGGGCgacACAUCCUGAGgacGCCg -3'
miRNA:   3'- -UGAGuUGCCUGac-UGUGGGGCUU---CGG- -5'
9036 3' -54.7 NC_002512.2 + 4895 0.68 0.929063
Target:  5'- aGCggCGACGGGaagagGGCGCCgCCGccGCCg -3'
miRNA:   3'- -UGa-GUUGCCUga---CUGUGG-GGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 5375 0.67 0.962682
Target:  5'- cCUC--CGGcuCUGGCGCaCCCGAcacAGCCg -3'
miRNA:   3'- uGAGuuGCCu-GACUGUG-GGGCU---UCGG- -5'
9036 3' -54.7 NC_002512.2 + 7271 0.67 0.962682
Target:  5'- -gUCGggauCGGGCgcGAgGCCCCGggGgCCg -3'
miRNA:   3'- ugAGUu---GCCUGa-CUgUGGGGCuuC-GG- -5'
9036 3' -54.7 NC_002512.2 + 7464 0.67 0.962682
Target:  5'- aGCcgCGGCGcGGCUGcCgGCCCCcgccGAAGCCg -3'
miRNA:   3'- -UGa-GUUGC-CUGACuG-UGGGG----CUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 7690 0.66 0.981258
Target:  5'- gACgaagaAACGGAC-GACGCCggCCGcGGCCc -3'
miRNA:   3'- -UGag---UUGCCUGaCUGUGG--GGCuUCGG- -5'
9036 3' -54.7 NC_002512.2 + 8167 0.68 0.947644
Target:  5'- cGCUCGG-GGAuCUcGGCguaGCaCCCGAGGCCg -3'
miRNA:   3'- -UGAGUUgCCU-GA-CUG---UG-GGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 8848 0.77 0.53157
Target:  5'- gGCUCGcugcCGGGC-GGCACCCCGuugguGGCCg -3'
miRNA:   3'- -UGAGUu---GCCUGaCUGUGGGGCu----UCGG- -5'
9036 3' -54.7 NC_002512.2 + 9548 0.67 0.968941
Target:  5'- gGCgUUGACGaGGCcguccGGCcCCCCGGAGCCc -3'
miRNA:   3'- -UG-AGUUGC-CUGa----CUGuGGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 10256 0.68 0.929063
Target:  5'- uCUCGaagaaGCGG---GACACCCCGAuGCCc -3'
miRNA:   3'- uGAGU-----UGCCugaCUGUGGGGCUuCGG- -5'
9036 3' -54.7 NC_002512.2 + 10558 0.67 0.965912
Target:  5'- aGC-CGGCGGGCcacgccGACGcucuCCCCGuGGCCg -3'
miRNA:   3'- -UGaGUUGCCUGa-----CUGU----GGGGCuUCGG- -5'
9036 3' -54.7 NC_002512.2 + 10947 0.69 0.906847
Target:  5'- -gUCGACgaGGACgccGGCGCCCUcGGGCCa -3'
miRNA:   3'- ugAGUUG--CCUGa--CUGUGGGGcUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 11288 0.66 0.981258
Target:  5'- -gUCcGCGGGC-GAgACCCCGggGa- -3'
miRNA:   3'- ugAGuUGCCUGaCUgUGGGGCuuCgg -5'
9036 3' -54.7 NC_002512.2 + 11584 0.71 0.844126
Target:  5'- cACgagCGGCcgcccaGGGCcgGGgACCCCGAGGCCg -3'
miRNA:   3'- -UGa--GUUG------CCUGa-CUgUGGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 13289 0.71 0.836165
Target:  5'- aACUCGGucCGGAUcGACACCCa-GGGCCu -3'
miRNA:   3'- -UGAGUU--GCCUGaCUGUGGGgcUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 13459 0.66 0.971773
Target:  5'- gGCggCGGCGaGcCUGGCGuCCCCGGaccugcugcGGCCg -3'
miRNA:   3'- -UGa-GUUGC-CuGACUGU-GGGGCU---------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.