miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9036 3' -54.7 NC_002512.2 + 18952 0.65 0.982635
Target:  5'- cCUCGggGCGGACUG-CAUCgCGGcgaugaugccggagAGCCg -3'
miRNA:   3'- uGAGU--UGCCUGACuGUGGgGCU--------------UCGG- -5'
9036 3' -54.7 NC_002512.2 + 51353 0.65 0.982635
Target:  5'- gGCUCGAUGccggagacggagauGGCgGACGCCCuCaGAGCCc -3'
miRNA:   3'- -UGAGUUGC--------------CUGaCUGUGGG-GcUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 103485 0.65 0.982635
Target:  5'- gGCgUCGACGGcGCccGGgGCCCCGGgcgcucucccgggcGGCCa -3'
miRNA:   3'- -UG-AGUUGCC-UGa-CUgUGGGGCU--------------UCGG- -5'
9036 3' -54.7 NC_002512.2 + 128537 0.66 0.976633
Target:  5'- gUUCGugGGGCUGAaaugucacaugucCACCUuCGAcGGCCu -3'
miRNA:   3'- uGAGUugCCUGACU-------------GUGGG-GCU-UCGG- -5'
9036 3' -54.7 NC_002512.2 + 50397 0.66 0.976871
Target:  5'- --aCGACGauGGCgacGACGCCgCCGAAGCa -3'
miRNA:   3'- ugaGUUGC--CUGa--CUGUGG-GGCUUCGg -5'
9036 3' -54.7 NC_002512.2 + 49287 0.66 0.97915
Target:  5'- gACUCcgacgcuguguGACGGACgccacggcccUGAUagagaGCCaCCGGAGCCc -3'
miRNA:   3'- -UGAG-----------UUGCCUG----------ACUG-----UGG-GGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 28946 0.66 0.97915
Target:  5'- cACUCGACGGcGCaGAagAUCCUG-AGCCa -3'
miRNA:   3'- -UGAGUUGCC-UGaCUg-UGGGGCuUCGG- -5'
9036 3' -54.7 NC_002512.2 + 32411 0.66 0.971773
Target:  5'- --cCGAUGGGCU----CCCCGAAGCUg -3'
miRNA:   3'- ugaGUUGCCUGAcuguGGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 66203 0.66 0.976871
Target:  5'- cAUUCGGacaGGGCgagGACGuCCCCGGccAGCUu -3'
miRNA:   3'- -UGAGUUg--CCUGa--CUGU-GGGGCU--UCGG- -5'
9036 3' -54.7 NC_002512.2 + 225988 0.66 0.976633
Target:  5'- gGCUCGAacgucguCGGAUUGACcgACCCaacuGAcGCCg -3'
miRNA:   3'- -UGAGUU-------GCCUGACUG--UGGGg---CUuCGG- -5'
9036 3' -54.7 NC_002512.2 + 35109 0.66 0.975419
Target:  5'- cGCUCGgaguucccguggacGCGGACcaggucccgacUGGCGCCCaCGGuggagaucggcaccAGCCg -3'
miRNA:   3'- -UGAGU--------------UGCCUG-----------ACUGUGGG-GCU--------------UCGG- -5'
9036 3' -54.7 NC_002512.2 + 45285 0.66 0.97893
Target:  5'- cGCUCGucucgcgggucggACGGACcGcCGCCCUGccGGCCc -3'
miRNA:   3'- -UGAGU-------------UGCCUGaCuGUGGGGCu-UCGG- -5'
9036 3' -54.7 NC_002512.2 + 100311 0.66 0.976871
Target:  5'- --gCGACgGGGCcGACGUCCCGgcGCCu -3'
miRNA:   3'- ugaGUUG-CCUGaCUGUGGGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 22892 0.66 0.971773
Target:  5'- uGCUgAccccGCGGGCcacgGGCAUCCCGGgcGGCUu -3'
miRNA:   3'- -UGAgU----UGCCUGa---CUGUGGGGCU--UCGG- -5'
9036 3' -54.7 NC_002512.2 + 64490 0.66 0.97893
Target:  5'- cCUCc-UGGACcaUGAgCGCCCCGAccuugcgGGCCa -3'
miRNA:   3'- uGAGuuGCCUG--ACU-GUGGGGCU-------UCGG- -5'
9036 3' -54.7 NC_002512.2 + 14447 0.66 0.972852
Target:  5'- cGCUCccGgGGGCUGACgaucuugaugaaggcGCCCUuGGGCCa -3'
miRNA:   3'- -UGAGu-UgCCUGACUG---------------UGGGGcUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 140189 0.66 0.97915
Target:  5'- uGCUCAAgcacaucgaguuCGGcCUGccGCucuCCCCGAGGCa -3'
miRNA:   3'- -UGAGUU------------GCCuGAC--UGu--GGGGCUUCGg -5'
9036 3' -54.7 NC_002512.2 + 124516 0.66 0.97915
Target:  5'- -gUCGAUGGGuCUGA-ACCCCGccGUCa -3'
miRNA:   3'- ugAGUUGCCU-GACUgUGGGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 155023 0.66 0.976871
Target:  5'- ---gAGCGGAaagaugaUGACGCCCgCGGgaGGCCc -3'
miRNA:   3'- ugagUUGCCUg------ACUGUGGG-GCU--UCGG- -5'
9036 3' -54.7 NC_002512.2 + 18295 0.66 0.973641
Target:  5'- uCUCGGCGGAgcagaaggggaugggGACGCCCCGcauGCg -3'
miRNA:   3'- uGAGUUGCCUga-------------CUGUGGGGCuu-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.