miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9036 3' -54.7 NC_002512.2 + 117991 0.71 0.844126
Target:  5'- uGCUCGGgGuGCUGGauuGCCUCGAGGCCc -3'
miRNA:   3'- -UGAGUUgCcUGACUg--UGGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 108425 0.72 0.811248
Target:  5'- gACggCGGCGGGCgcggGGCggaccccucaggGCUCCGggGCCg -3'
miRNA:   3'- -UGa-GUUGCCUGa---CUG------------UGGGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 2233 0.72 0.811248
Target:  5'- cGCUCuuccucCGGACccgGGCGCUCCGucGCCu -3'
miRNA:   3'- -UGAGuu----GCCUGa--CUGUGGGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 44335 0.71 0.819719
Target:  5'- cCUCGACGGcC--ACGCCgCGggGCCg -3'
miRNA:   3'- uGAGUUGCCuGacUGUGGgGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 24203 0.71 0.828027
Target:  5'- gUUCGACaGGACgGugACgCCGGAGCUg -3'
miRNA:   3'- uGAGUUG-CCUGaCugUGgGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 13289 0.71 0.836165
Target:  5'- aACUCGGucCGGAUcGACACCCa-GGGCCu -3'
miRNA:   3'- -UGAGUU--GCCUGaCUGUGGGgcUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 16864 0.71 0.836165
Target:  5'- aGC-CGGCGGAC--GCACCUCGAgagGGCCc -3'
miRNA:   3'- -UGaGUUGCCUGacUGUGGGGCU---UCGG- -5'
9036 3' -54.7 NC_002512.2 + 64232 0.71 0.836165
Target:  5'- cCUCGgccuGCGGGaaGGC-CCCCGAAGCg -3'
miRNA:   3'- uGAGU----UGCCUgaCUGuGGGGCUUCGg -5'
9036 3' -54.7 NC_002512.2 + 81097 0.71 0.843338
Target:  5'- uGCcgCAGCGGuacgagucGCUGACGCCCaggucguCGAAGUCg -3'
miRNA:   3'- -UGa-GUUGCC--------UGACUGUGGG-------GCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 128751 0.72 0.802623
Target:  5'- cGCUCAAggUGGGCaagGACACCCucgaCGAGGCg -3'
miRNA:   3'- -UGAGUU--GCCUGa--CUGUGGG----GCUUCGg -5'
9036 3' -54.7 NC_002512.2 + 34349 0.72 0.801752
Target:  5'- aGCUgAGCGGGCggagGAggUACCCCGAgaaguaguaggcgAGCCc -3'
miRNA:   3'- -UGAgUUGCCUGa---CU--GUGGGGCU-------------UCGG- -5'
9036 3' -54.7 NC_002512.2 + 95299 0.72 0.79385
Target:  5'- -gUCGGCGGAC-GAgGCgCCGAAGCa -3'
miRNA:   3'- ugAGUUGCCUGaCUgUGgGGCUUCGg -5'
9036 3' -54.7 NC_002512.2 + 8848 0.77 0.53157
Target:  5'- gGCUCGcugcCGGGC-GGCACCCCGuugguGGCCg -3'
miRNA:   3'- -UGAGUu---GCCUGaCUGUGGGGCu----UCGG- -5'
9036 3' -54.7 NC_002512.2 + 44454 0.76 0.559801
Target:  5'- gACagGACGGcCUcgaagaccuccagGGCGCCCCGggGCCg -3'
miRNA:   3'- -UGagUUGCCuGA-------------CUGUGGGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 18690 0.76 0.570623
Target:  5'- aGCUCGugGGcgGCgGGCACCCCGAgcagGGCg -3'
miRNA:   3'- -UGAGUugCC--UGaCUGUGGGGCU----UCGg -5'
9036 3' -54.7 NC_002512.2 + 134698 0.75 0.630307
Target:  5'- cGCUCGcCGGGCUgcccGACAUCCUGggGgCCg -3'
miRNA:   3'- -UGAGUuGCCUGA----CUGUGGGGCuuC-GG- -5'
9036 3' -54.7 NC_002512.2 + 102044 0.73 0.719363
Target:  5'- aGCUucgCGGCGGACgccgccGACGaccUCCCGGAGCCg -3'
miRNA:   3'- -UGA---GUUGCCUGa-----CUGU---GGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 74909 0.73 0.738584
Target:  5'- --gCGACGGACgcgGAgGCCCgGAGGCg -3'
miRNA:   3'- ugaGUUGCCUGa--CUgUGGGgCUUCGg -5'
9036 3' -54.7 NC_002512.2 + 65419 0.73 0.748066
Target:  5'- aGCUCGGCGGGCgGucguCGCCCCc--GCCg -3'
miRNA:   3'- -UGAGUUGCCUGaCu---GUGGGGcuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 28430 0.72 0.784938
Target:  5'- gGC-CGACGGg--GAcCACCUCGAGGCCg -3'
miRNA:   3'- -UGaGUUGCCugaCU-GUGGGGCUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.