miRNA display CGI


Results 1 - 20 of 206 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9036 3' -54.7 NC_002512.2 + 47912 0.66 0.981258
Target:  5'- gACgu-ACGGugUGACguuCCCGAcGCCu -3'
miRNA:   3'- -UGaguUGCCugACUGug-GGGCUuCGG- -5'
9036 3' -54.7 NC_002512.2 + 150908 0.66 0.971773
Target:  5'- uCUCGgccGCGGAC-GACGCUaaguCCG-AGCCg -3'
miRNA:   3'- uGAGU---UGCCUGaCUGUGG----GGCuUCGG- -5'
9036 3' -54.7 NC_002512.2 + 129849 0.66 0.971773
Target:  5'- uCUCAGCGcccGGCgGAggaGCCCCuuGAGGCCg -3'
miRNA:   3'- uGAGUUGC---CUGaCUg--UGGGG--CUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 150874 1.12 0.003893
Target:  5'- cACUCAACGGACUGACACCCCGAAGCCa -3'
miRNA:   3'- -UGAGUUGCCUGACUGUGGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 111225 0.66 0.97915
Target:  5'- gACgauGACGGGCggccgGGCGCCCgGAGcGUCg -3'
miRNA:   3'- -UGag-UUGCCUGa----CUGUGGGgCUU-CGG- -5'
9036 3' -54.7 NC_002512.2 + 202358 0.66 0.976871
Target:  5'- gGCUCGAuUGGuCUGAgcCGCCuCCGAcGCUg -3'
miRNA:   3'- -UGAGUU-GCCuGACU--GUGG-GGCUuCGG- -5'
9036 3' -54.7 NC_002512.2 + 221033 0.66 0.976871
Target:  5'- cAC-CAACGGGgUGcCGCCCgGcagcGAGCCc -3'
miRNA:   3'- -UGaGUUGCCUgACuGUGGGgC----UUCGG- -5'
9036 3' -54.7 NC_002512.2 + 208797 0.66 0.976871
Target:  5'- ---aGACGG-CgGuCGCCCCGGAGCg -3'
miRNA:   3'- ugagUUGCCuGaCuGUGGGGCUUCGg -5'
9036 3' -54.7 NC_002512.2 + 162146 0.66 0.974414
Target:  5'- gGCUC-GCGaGGCcGGCACgCCGAccgcgaaagcGGCCg -3'
miRNA:   3'- -UGAGuUGC-CUGaCUGUGgGGCU----------UCGG- -5'
9036 3' -54.7 NC_002512.2 + 90062 0.66 0.974414
Target:  5'- aACUCGcccACGucCUugGACACCcgaCCGAGGCCc -3'
miRNA:   3'- -UGAGU---UGCcuGA--CUGUGG---GGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 158247 0.66 0.974414
Target:  5'- gGCUCggUGGcCgaguACACCCUGGAGUUc -3'
miRNA:   3'- -UGAGuuGCCuGac--UGUGGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 221649 0.66 0.974414
Target:  5'- uGCUCuACGGcGC-GACGCUC-GAGGCCu -3'
miRNA:   3'- -UGAGuUGCC-UGaCUGUGGGgCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 108216 0.66 0.980643
Target:  5'- cACUCGGCGGcgacgugaucaaACaggGACGCCgCGAgauccaggacgcggAGCCg -3'
miRNA:   3'- -UGAGUUGCC------------UGa--CUGUGGgGCU--------------UCGG- -5'
9036 3' -54.7 NC_002512.2 + 132940 0.66 0.974414
Target:  5'- --aCGACGGuCggcgcGACGCCCCGcuGCUu -3'
miRNA:   3'- ugaGUUGCCuGa----CUGUGGGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 223198 0.66 0.97915
Target:  5'- cGCcCGACGGGgacGGCGUCCCGGAGCg -3'
miRNA:   3'- -UGaGUUGCCUga-CUGUGGGGCUUCGg -5'
9036 3' -54.7 NC_002512.2 + 103387 0.66 0.976871
Target:  5'- cGC-CGAgGcGCUcGCGCUCCGggGCCa -3'
miRNA:   3'- -UGaGUUgCcUGAcUGUGGGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 119951 0.66 0.974414
Target:  5'- cACgCggUGGACUucGugGCgCUGggGCCg -3'
miRNA:   3'- -UGaGuuGCCUGA--CugUGgGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 77145 0.66 0.971773
Target:  5'- -gUCGGgGGACcuuccGACcgcCCCCGAAGCUu -3'
miRNA:   3'- ugAGUUgCCUGa----CUGu--GGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 227345 0.66 0.97915
Target:  5'- ---gGACGGAgaGACgggacggaggaGgCCCGggGCCg -3'
miRNA:   3'- ugagUUGCCUgaCUG-----------UgGGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 227884 0.66 0.976871
Target:  5'- gGCUCAGgcGACgcgGGCGagUCCGAGGCCg -3'
miRNA:   3'- -UGAGUUgcCUGa--CUGUg-GGGCUUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.