miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9036 3' -54.7 NC_002512.2 + 227884 0.66 0.976871
Target:  5'- gGCUCAGgcGACgcgGGCGagUCCGAGGCCg -3'
miRNA:   3'- -UGAGUUgcCUGa--CUGUg-GGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 227345 0.66 0.97915
Target:  5'- ---gGACGGAgaGACgggacggaggaGgCCCGggGCCg -3'
miRNA:   3'- ugagUUGCCUgaCUG-----------UgGGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 227305 0.69 0.918409
Target:  5'- aGCgccagCAugGGGgaGACGCgCCGgcGCCc -3'
miRNA:   3'- -UGa----GUugCCUgaCUGUGgGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 227050 0.66 0.981258
Target:  5'- ---gAACGGGCgGACGgCC-GGAGCCg -3'
miRNA:   3'- ugagUUGCCUGaCUGUgGGgCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 226502 0.68 0.938806
Target:  5'- cCUCGccGCGGguccuGCUGGCgGCCCUGccGCCg -3'
miRNA:   3'- uGAGU--UGCC-----UGACUG-UGGGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 226274 0.73 0.726126
Target:  5'- aGCUCAcgaccGCGGGCUcugcgccuguccccGAgAcCCCCGggGCCu -3'
miRNA:   3'- -UGAGU-----UGCCUGA--------------CUgU-GGGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 225988 0.66 0.976633
Target:  5'- gGCUCGAacgucguCGGAUUGACcgACCCaacuGAcGCCg -3'
miRNA:   3'- -UGAGUU-------GCCUGACUG--UGGGg---CUuCGG- -5'
9036 3' -54.7 NC_002512.2 + 224015 0.66 0.974414
Target:  5'- gACgaguCGGAC-GACGCCCgggacuccgaCGggGCCg -3'
miRNA:   3'- -UGaguuGCCUGaCUGUGGG----------GCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 223198 0.66 0.97915
Target:  5'- cGCcCGACGGGgacGGCGUCCCGGAGCg -3'
miRNA:   3'- -UGaGUUGCCUga-CUGUGGGGCUUCGg -5'
9036 3' -54.7 NC_002512.2 + 221649 0.66 0.974414
Target:  5'- uGCUCuACGGcGC-GACGCUC-GAGGCCu -3'
miRNA:   3'- -UGAGuUGCC-UGaCUGUGGGgCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 221158 0.67 0.967148
Target:  5'- -gUCGACGGGCgGGCgcgcgcggccgaccgACCUCGGAGUg -3'
miRNA:   3'- ugAGUUGCCUGaCUG---------------UGGGGCUUCGg -5'
9036 3' -54.7 NC_002512.2 + 221033 0.66 0.976871
Target:  5'- cAC-CAACGGGgUGcCGCCCgGcagcGAGCCc -3'
miRNA:   3'- -UGaGUUGCCUgACuGUGGGgC----UUCGG- -5'
9036 3' -54.7 NC_002512.2 + 220842 0.69 0.92385
Target:  5'- -gUCGACGGGCUGuguCGCgucuacgucguCCgCGggGCCu -3'
miRNA:   3'- ugAGUUGCCUGACu--GUG-----------GG-GCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 218650 0.67 0.958888
Target:  5'- cGCcCGGCGGACggaggcgGAUACCCgGGcacaccgGGCCc -3'
miRNA:   3'- -UGaGUUGCCUGa------CUGUGGGgCU-------UCGG- -5'
9036 3' -54.7 NC_002512.2 + 210917 0.68 0.940645
Target:  5'- gGCUCucCGGcaucaucgccgcgauGCaGuucCGCCCCGAGGCCa -3'
miRNA:   3'- -UGAGuuGCC---------------UGaCu--GUGGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 210811 0.68 0.929063
Target:  5'- gGCaUCAuCGGGCUcGCGCUCCGGugggacacGGCCg -3'
miRNA:   3'- -UG-AGUuGCCUGAcUGUGGGGCU--------UCGG- -5'
9036 3' -54.7 NC_002512.2 + 208797 0.66 0.976871
Target:  5'- ---aGACGG-CgGuCGCCCCGGAGCg -3'
miRNA:   3'- ugagUUGCCuGaCuGUGGGGCUUCGg -5'
9036 3' -54.7 NC_002512.2 + 208416 0.71 0.819719
Target:  5'- uGCUCuACGGGCgc-CGCuCCCGgcGCCg -3'
miRNA:   3'- -UGAGuUGCCUGacuGUG-GGGCuuCGG- -5'
9036 3' -54.7 NC_002512.2 + 207740 0.71 0.819719
Target:  5'- -gUCGGCGGGg-GACGCUCCGggGUg -3'
miRNA:   3'- ugAGUUGCCUgaCUGUGGGGCuuCGg -5'
9036 3' -54.7 NC_002512.2 + 205656 0.73 0.757451
Target:  5'- -gUCGGCGGGCccGACGCCUCGGacAGCUc -3'
miRNA:   3'- ugAGUUGCCUGa-CUGUGGGGCU--UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.