miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9036 3' -54.7 NC_002512.2 + 14447 0.66 0.972852
Target:  5'- cGCUCccGgGGGCUGACgaucuugaugaaggcGCCCUuGGGCCa -3'
miRNA:   3'- -UGAGu-UgCCUGACUG---------------UGGGGcUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 14894 0.7 0.89439
Target:  5'- aGCUCccc-GACgGGCAUCCCGAGGUCg -3'
miRNA:   3'- -UGAGuugcCUGaCUGUGGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 15199 0.69 0.912741
Target:  5'- --aCAACGGuaacggggaagaACUGAUaaaugaaacgACCUCGAAGCCa -3'
miRNA:   3'- ugaGUUGCC------------UGACUG----------UGGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 16375 0.7 0.89439
Target:  5'- --cCGAccCGGAC-GACGCCCuCGAAGUCg -3'
miRNA:   3'- ugaGUU--GCCUGaCUGUGGG-GCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 16864 0.71 0.836165
Target:  5'- aGC-CGGCGGAC--GCACCUCGAgagGGCCc -3'
miRNA:   3'- -UGaGUUGCCUGacUGUGGGGCU---UCGG- -5'
9036 3' -54.7 NC_002512.2 + 18088 0.67 0.959243
Target:  5'- uGCgccgCGGCGGGacGGC-CCCCGcGGCCa -3'
miRNA:   3'- -UGa---GUUGCCUgaCUGuGGGGCuUCGG- -5'
9036 3' -54.7 NC_002512.2 + 18295 0.66 0.973641
Target:  5'- uCUCGGCGGAgcagaaggggaugggGACGCCCCGcauGCg -3'
miRNA:   3'- uGAGUUGCCUga-------------CUGUGGGGCuu-CGg -5'
9036 3' -54.7 NC_002512.2 + 18690 0.76 0.570623
Target:  5'- aGCUCGugGGcgGCgGGCACCCCGAgcagGGCg -3'
miRNA:   3'- -UGAGUugCC--UGaCUGUGGGGCU----UCGg -5'
9036 3' -54.7 NC_002512.2 + 18952 0.65 0.982635
Target:  5'- cCUCGggGCGGACUG-CAUCgCGGcgaugaugccggagAGCCg -3'
miRNA:   3'- uGAGU--UGCCUGACuGUGGgGCU--------------UCGG- -5'
9036 3' -54.7 NC_002512.2 + 19372 0.67 0.955594
Target:  5'- gGCUCGGCGGcCUcGCGCUCgCGucgGGCCc -3'
miRNA:   3'- -UGAGUUGCCuGAcUGUGGG-GCu--UCGG- -5'
9036 3' -54.7 NC_002512.2 + 19823 0.68 0.931084
Target:  5'- --cCGACGGACaugagggccaggucGACGuCCCCGGAGCg -3'
miRNA:   3'- ugaGUUGCCUGa-------------CUGU-GGGGCUUCGg -5'
9036 3' -54.7 NC_002512.2 + 22132 0.68 0.938806
Target:  5'- cACggCGGCGG-CUc-CACCCCGGAGCg -3'
miRNA:   3'- -UGa-GUUGCCuGAcuGUGGGGCUUCGg -5'
9036 3' -54.7 NC_002512.2 + 22892 0.66 0.971773
Target:  5'- uGCUgAccccGCGGGCcacgGGCAUCCCGGgcGGCUu -3'
miRNA:   3'- -UGAgU----UGCCUGa---CUGUGGGGCU--UCGG- -5'
9036 3' -54.7 NC_002512.2 + 23306 0.68 0.950929
Target:  5'- cGCgu-ACGGcaccugcaaguuCUGGCGCCCCG-GGCCg -3'
miRNA:   3'- -UGaguUGCCu-----------GACUGUGGGGCuUCGG- -5'
9036 3' -54.7 NC_002512.2 + 24203 0.71 0.828027
Target:  5'- gUUCGACaGGACgGugACgCCGGAGCUg -3'
miRNA:   3'- uGAGUUG-CCUGaCugUGgGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 27593 0.67 0.965912
Target:  5'- aGCgCGGCGGcAC-GGCGCCCCGGucCCa -3'
miRNA:   3'- -UGaGUUGCC-UGaCUGUGGGGCUucGG- -5'
9036 3' -54.7 NC_002512.2 + 28430 0.72 0.784938
Target:  5'- gGC-CGACGGg--GAcCACCUCGAGGCCg -3'
miRNA:   3'- -UGaGUUGCCugaCU-GUGGGGCUUCGG- -5'
9036 3' -54.7 NC_002512.2 + 28946 0.66 0.97915
Target:  5'- cACUCGACGGcGCaGAagAUCCUG-AGCCa -3'
miRNA:   3'- -UGAGUUGCC-UGaCUg-UGGGGCuUCGG- -5'
9036 3' -54.7 NC_002512.2 + 29172 0.66 0.974414
Target:  5'- gAC-CGcCGGGC-GGCAgCCCGAcGCCa -3'
miRNA:   3'- -UGaGUuGCCUGaCUGUgGGGCUuCGG- -5'
9036 3' -54.7 NC_002512.2 + 29771 0.66 0.981258
Target:  5'- gACgCGACGGcgauGCUGAagUACCCCGgcGaCCc -3'
miRNA:   3'- -UGaGUUGCC----UGACU--GUGGGGCuuC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.