miRNA display CGI


Results 81 - 100 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 5' -57.6 NC_002512.2 + 78878 0.67 0.891615
Target:  5'- uCGCGUCgCCauggagaccgAGACCCGUCAaUCAgCGGu -3'
miRNA:   3'- -GUGCAG-GG----------UCUGGGCAGUgAGU-GCCc -5'
9037 5' -57.6 NC_002512.2 + 106762 0.67 0.891615
Target:  5'- cCGCGUCCgGcucucGGCCCGcggCACUgGuCGGGg -3'
miRNA:   3'- -GUGCAGGgU-----CUGGGCa--GUGAgU-GCCC- -5'
9037 5' -57.6 NC_002512.2 + 120810 0.67 0.891615
Target:  5'- gGCGgucUCUCGGACCCGggaCGCg-GCGGGu -3'
miRNA:   3'- gUGC---AGGGUCUGGGCa--GUGagUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 9755 0.67 0.897242
Target:  5'- gGCGgagCCGGACCCGcCgccccgcguggcgGCUCACGGa -3'
miRNA:   3'- gUGCag-GGUCUGGGCaG-------------UGAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 111768 0.67 0.897856
Target:  5'- uCACGUCgCCAGGgagcCCCGcugggaCGCcCACGGGu -3'
miRNA:   3'- -GUGCAG-GGUCU----GGGCa-----GUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 3693 0.67 0.897856
Target:  5'- -cCGUCCCcgacggaggucGACCCgGUCGCUCccCGGGu -3'
miRNA:   3'- guGCAGGGu----------CUGGG-CAGUGAGu-GCCC- -5'
9037 5' -57.6 NC_002512.2 + 21302 0.67 0.897856
Target:  5'- -uCGUCCCGGACCCGcugCGCgUCGagcuCGGc -3'
miRNA:   3'- guGCAGGGUCUGGGCa--GUG-AGU----GCCc -5'
9037 5' -57.6 NC_002512.2 + 134199 0.67 0.897856
Target:  5'- -cCGUCCCcgccggAGGCCCGgcggacgcgCGCUCACGa- -3'
miRNA:   3'- guGCAGGG------UCUGGGCa--------GUGAGUGCcc -5'
9037 5' -57.6 NC_002512.2 + 18561 0.67 0.90389
Target:  5'- aGCG-CCCGGGCCCGgacCGC-CACGa- -3'
miRNA:   3'- gUGCaGGGUCUGGGCa--GUGaGUGCcc -5'
9037 5' -57.6 NC_002512.2 + 63948 0.67 0.90389
Target:  5'- gGCGUCCUucugguAGACCCGaCACaUGCGGu -3'
miRNA:   3'- gUGCAGGG------UCUGGGCaGUGaGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 24901 0.67 0.90389
Target:  5'- cCGCcUUCCGGucCCCGUCGCcCGCGGc -3'
miRNA:   3'- -GUGcAGGGUCu-GGGCAGUGaGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 24676 0.67 0.915328
Target:  5'- -cCGUCCCGGGCC----GCUCggGCGGGg -3'
miRNA:   3'- guGCAGGGUCUGGgcagUGAG--UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 118640 0.67 0.915328
Target:  5'- cCGCGUgCC--GCCCGaCGCUC-CGGGc -3'
miRNA:   3'- -GUGCAgGGucUGGGCaGUGAGuGCCC- -5'
9037 5' -57.6 NC_002512.2 + 39142 0.67 0.920728
Target:  5'- aGCGUCCCGGcCuCCGagAUcagUACGGGg -3'
miRNA:   3'- gUGCAGGGUCuG-GGCagUGa--GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 138785 0.67 0.920728
Target:  5'- aGCG-CCaCGGGCCCGUCcucCUCGCGc- -3'
miRNA:   3'- gUGCaGG-GUCUGGGCAGu--GAGUGCcc -5'
9037 5' -57.6 NC_002512.2 + 132897 0.67 0.920728
Target:  5'- gGCGUCCCcggcGACgCGaUACUCucGCGGGc -3'
miRNA:   3'- gUGCAGGGu---CUGgGCaGUGAG--UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 106035 0.67 0.920728
Target:  5'- aACG-CUCAuaauCCCGUCGC-CGCGGGc -3'
miRNA:   3'- gUGCaGGGUcu--GGGCAGUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 117887 0.67 0.920728
Target:  5'- gACG-CCgGgGGCCCGUCGCUgcucCACGGc -3'
miRNA:   3'- gUGCaGGgU-CUGGGCAGUGA----GUGCCc -5'
9037 5' -57.6 NC_002512.2 + 217763 0.67 0.915328
Target:  5'- ----cCCCGGGCCCGUCcCcgUCGcCGGGg -3'
miRNA:   3'- gugcaGGGUCUGGGCAGuG--AGU-GCCC- -5'
9037 5' -57.6 NC_002512.2 + 203667 0.67 0.915328
Target:  5'- --gGUCCCGucUCCGUCGC-CACGGu -3'
miRNA:   3'- gugCAGGGUcuGGGCAGUGaGUGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.