miRNA display CGI


Results 81 - 100 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 5' -57.6 NC_002512.2 + 89446 0.68 0.885169
Target:  5'- uCACGU-CCGGGCCCauggaGUCGCaguaGCGGGc -3'
miRNA:   3'- -GUGCAgGGUCUGGG-----CAGUGag--UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 80752 0.68 0.885169
Target:  5'- gGCgGUCCCGGGuCCCGggggUC-CUCGCGGc -3'
miRNA:   3'- gUG-CAGGGUCU-GGGC----AGuGAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 136589 0.68 0.878523
Target:  5'- aACGUCUCGGACCCc-CugUgCACGGu -3'
miRNA:   3'- gUGCAGGGUCUGGGcaGugA-GUGCCc -5'
9037 5' -57.6 NC_002512.2 + 45390 0.68 0.857421
Target:  5'- aCGCGggCCGGGaCUGUCGCUCguGCGGGc -3'
miRNA:   3'- -GUGCagGGUCUgGGCAGUGAG--UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 114099 0.68 0.878523
Target:  5'- gACGUCCCAG--UCGUCGCaguagCACGGc -3'
miRNA:   3'- gUGCAGGGUCugGGCAGUGa----GUGCCc -5'
9037 5' -57.6 NC_002512.2 + 116670 0.68 0.850015
Target:  5'- -cCGUCUCcccgggcgaGGACCCGgcuccCGCUCGCGGa -3'
miRNA:   3'- guGCAGGG---------UCUGGGCa----GUGAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 178833 0.68 0.850015
Target:  5'- aGCcUUCCGGGCCCGagcUCucUUCACGGGg -3'
miRNA:   3'- gUGcAGGGUCUGGGC---AGu-GAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 14277 0.68 0.856688
Target:  5'- cCACGcugCCgCAGACCCGgacgaCGCUguccuccCACGGGu -3'
miRNA:   3'- -GUGCa--GG-GUCUGGGCa----GUGA-------GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 43530 0.68 0.87168
Target:  5'- gACGUCCCcGGCCCcgaagacgUugUCGCGGa -3'
miRNA:   3'- gUGCAGGGuCUGGGca------GugAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 225704 0.68 0.862497
Target:  5'- gGCGUCCuCAGgaugugucGCCCGcgagccgcggcgacUCGCUCAguCGGGg -3'
miRNA:   3'- gUGCAGG-GUC--------UGGGC--------------AGUGAGU--GCCC- -5'
9037 5' -57.6 NC_002512.2 + 200501 0.68 0.86393
Target:  5'- gGCGUCCUccgaccgGGGCUCGUC-CUCACGc- -3'
miRNA:   3'- gUGCAGGG-------UCUGGGCAGuGAGUGCcc -5'
9037 5' -57.6 NC_002512.2 + 184503 0.68 0.864644
Target:  5'- gACaGUCCCGGcccgcguCCuCGUCGCagcagUCGCGGGg -3'
miRNA:   3'- gUG-CAGGGUCu------GG-GCAGUG-----AGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 120576 0.68 0.865357
Target:  5'- aCACGUCCCccGACCCGaccuucugcguccccCACggcUACGGGa -3'
miRNA:   3'- -GUGCAGGGu-CUGGGCa--------------GUGa--GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 149042 0.68 0.87168
Target:  5'- cCGCGUCCCgAGGCUCG-C-CU-ACGGGg -3'
miRNA:   3'- -GUGCAGGG-UCUGGGCaGuGAgUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 138955 0.69 0.826758
Target:  5'- gCACGcCCCGGucgcGCCCGUCAg-CAUGGa -3'
miRNA:   3'- -GUGCaGGGUC----UGGGCAGUgaGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 199633 0.69 0.842432
Target:  5'- gCGCGUCCgCggGGACCCGUUuCcCGCGGa -3'
miRNA:   3'- -GUGCAGG-G--UCUGGGCAGuGaGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 43230 0.69 0.810449
Target:  5'- gACGUCCUcccggagcuGGGCCCaGUgGCcCGCGGGc -3'
miRNA:   3'- gUGCAGGG---------UCUGGG-CAgUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 142205 0.69 0.802074
Target:  5'- gCGCGUCCCGucggucucGACgUCGUCGCcuUCGCGGa -3'
miRNA:   3'- -GUGCAGGGU--------CUG-GGCAGUG--AGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 76914 0.69 0.837799
Target:  5'- gCGCGUCCacuuuauaagaagaGGACCC--CGCUCGCGGa -3'
miRNA:   3'- -GUGCAGGg-------------UCUGGGcaGUGAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 3411 0.69 0.842432
Target:  5'- aGCG-CCCGGGcCCCGgccuccuccCGcCUCGCGGGg -3'
miRNA:   3'- gUGCaGGGUCU-GGGCa--------GU-GAGUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.