miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 5' -57.6 NC_002512.2 + 132897 0.67 0.920728
Target:  5'- gGCGUCCCcggcGACgCGaUACUCucGCGGGc -3'
miRNA:   3'- gUGCAGGGu---CUGgGCaGUGAG--UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 106035 0.67 0.920728
Target:  5'- aACG-CUCAuaauCCCGUCGC-CGCGGGc -3'
miRNA:   3'- gUGCaGGGUcu--GGGCAGUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 117887 0.67 0.920728
Target:  5'- gACG-CCgGgGGCCCGUCGCUgcucCACGGc -3'
miRNA:   3'- gUGCaGGgU-CUGGGCAGUGA----GUGCCc -5'
9037 5' -57.6 NC_002512.2 + 217763 0.67 0.915328
Target:  5'- ----cCCCGGGCCCGUCcCcgUCGcCGGGg -3'
miRNA:   3'- gugcaGGGUCUGGGCAGuG--AGU-GCCC- -5'
9037 5' -57.6 NC_002512.2 + 203667 0.67 0.915328
Target:  5'- --gGUCCCGucUCCGUCGC-CACGGu -3'
miRNA:   3'- gugCAGGGUcuGGGCAGUGaGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 202028 0.67 0.909715
Target:  5'- cCGgGUCCCccGCCgGUCcgGCUCGCGGu -3'
miRNA:   3'- -GUgCAGGGucUGGgCAG--UGAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 149657 0.67 0.909715
Target:  5'- gCACGUCCCGGagcuGCCCuaucCGCUC-CGGc -3'
miRNA:   3'- -GUGCAGGGUC----UGGGca--GUGAGuGCCc -5'
9037 5' -57.6 NC_002512.2 + 123098 0.67 0.90389
Target:  5'- gACGUcgaCCCcGACCCcgaccaGUCGC-CGCGGGc -3'
miRNA:   3'- gUGCA---GGGuCUGGG------CAGUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 111345 0.67 0.9027
Target:  5'- gGCGUCCCGGGCgCG-CACgaggacgaccCGGGg -3'
miRNA:   3'- gUGCAGGGUCUGgGCaGUGagu-------GCCC- -5'
9037 5' -57.6 NC_002512.2 + 149129 0.67 0.897856
Target:  5'- cCGCGaggaCCCccgGGACCCGggacCGC-CGCGGGg -3'
miRNA:   3'- -GUGCa---GGG---UCUGGGCa---GUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 223223 0.67 0.897856
Target:  5'- gCGCGUCCCGGccgGCUCGgugCACUUcgacuccuCGGGc -3'
miRNA:   3'- -GUGCAGGGUC---UGGGCa--GUGAGu-------GCCC- -5'
9037 5' -57.6 NC_002512.2 + 211329 0.67 0.897856
Target:  5'- gGCGgUCCGGGCCCGg-GCgCugGGGg -3'
miRNA:   3'- gUGCaGGGUCUGGGCagUGaGugCCC- -5'
9037 5' -57.6 NC_002512.2 + 189515 0.67 0.897856
Target:  5'- gACGcUCCGGGCCCGggcUCGC-CGCGGu -3'
miRNA:   3'- gUGCaGGGUCUGGGC---AGUGaGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 186327 0.67 0.897856
Target:  5'- aACGUCCUcauGGACgCCGUCAUcCGCGa- -3'
miRNA:   3'- gUGCAGGG---UCUG-GGCAGUGaGUGCcc -5'
9037 5' -57.6 NC_002512.2 + 180439 0.67 0.897856
Target:  5'- gGCGcCCCGGgcggcGCCCGUCAUUUcucgACGGc -3'
miRNA:   3'- gUGCaGGGUC-----UGGGCAGUGAG----UGCCc -5'
9037 5' -57.6 NC_002512.2 + 161492 0.67 0.897856
Target:  5'- cCACGUCaaggaGGACCUGgugCGCUgCGCGGa -3'
miRNA:   3'- -GUGCAGgg---UCUGGGCa--GUGA-GUGCCc -5'
9037 5' -57.6 NC_002512.2 + 218459 0.67 0.891615
Target:  5'- gGCGUCCCcgcGGACCgCGgUCAuCUCcucgucccGCGGGu -3'
miRNA:   3'- gUGCAGGG---UCUGG-GC-AGU-GAG--------UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 116670 0.68 0.850015
Target:  5'- -cCGUCUCcccgggcgaGGACCCGgcuccCGCUCGCGGa -3'
miRNA:   3'- guGCAGGG---------UCUGGGCa----GUGAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 178833 0.68 0.850015
Target:  5'- aGCcUUCCGGGCCCGagcUCucUUCACGGGg -3'
miRNA:   3'- gUGcAGGGUCUGGGC---AGu-GAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 14277 0.68 0.856688
Target:  5'- cCACGcugCCgCAGACCCGgacgaCGCUguccuccCACGGGu -3'
miRNA:   3'- -GUGCa--GG-GUCUGGGCa----GUGA-------GUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.