Results 61 - 80 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 112281 | 0.66 | 0.925914 |
Target: 5'- gAUGUCCCGGuucuCCuuCGUCACgauCGGGu -3' miRNA: 3'- gUGCAGGGUCu---GG--GCAGUGaguGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 127637 | 0.66 | 0.925914 |
Target: 5'- gACG-CCCGGACCCGg-GC-C-CGGGu -3' miRNA: 3'- gUGCaGGGUCUGGGCagUGaGuGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 137236 | 0.66 | 0.925914 |
Target: 5'- -cCGUCCCGGAUCCG-----CGCGGGu -3' miRNA: 3'- guGCAGGGUCUGGGCagugaGUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 25130 | 0.66 | 0.930886 |
Target: 5'- cCGCGcCCCAGGCCgGgaUCGCUgAgcaccCGGGu -3' miRNA: 3'- -GUGCaGGGUCUGGgC--AGUGAgU-----GCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 52776 | 0.66 | 0.930886 |
Target: 5'- gGCGcaCCCGGACCUccugGUCGCggagacgcaGCGGGg -3' miRNA: 3'- gUGCa-GGGUCUGGG----CAGUGag-------UGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 71721 | 0.66 | 0.933766 |
Target: 5'- cCGCGUCCCgaGGGCCUGgauggugcucaggUAgUCGCGGa -3' miRNA: 3'- -GUGCAGGG--UCUGGGCa------------GUgAGUGCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 49748 | 0.66 | 0.937487 |
Target: 5'- -cCGUCCUGGaccGCCCGaCGCUggacgccaucauggaCACGGGg -3' miRNA: 3'- guGCAGGGUC---UGGGCaGUGA---------------GUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 136163 | 0.66 | 0.940187 |
Target: 5'- -cCGUCCCcgucGAUCCGcCGCgcgGCGGGg -3' miRNA: 3'- guGCAGGGu---CUGGGCaGUGag-UGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 83189 | 0.66 | 0.940187 |
Target: 5'- -uCGUCuCCGucGCCCGUcCGCgCGCGGGg -3' miRNA: 3'- guGCAG-GGUc-UGGGCA-GUGaGUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 153510 | 0.66 | 0.943242 |
Target: 5'- cCGgGUUCCGGACCgguucacggcugcaUGUCGCUCGacaucuucucCGGGa -3' miRNA: 3'- -GUgCAGGGUCUGG--------------GCAGUGAGU----------GCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 11142 | 0.66 | 0.944519 |
Target: 5'- --aGUCCgAGGgCCGgacacgCGCUCgACGGGu -3' miRNA: 3'- gugCAGGgUCUgGGCa-----GUGAG-UGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 53221 | 0.66 | 0.944519 |
Target: 5'- --aGUCCCAGGaggCG-CGCUgGCGGGa -3' miRNA: 3'- gugCAGGGUCUgg-GCaGUGAgUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 83085 | 0.66 | 0.944519 |
Target: 5'- cCAgGUCCCGGGCC--UC-CUC-CGGGu -3' miRNA: 3'- -GUgCAGGGUCUGGgcAGuGAGuGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 123890 | 0.66 | 0.944519 |
Target: 5'- gCugGgccgaCguGAUCCGUUACUCgaGCGGGa -3' miRNA: 3'- -GugCag---GguCUGGGCAGUGAG--UGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 59277 | 0.66 | 0.944519 |
Target: 5'- cCACGUCCguGACgUCGU-GCUCgACGGa -3' miRNA: 3'- -GUGCAGGguCUG-GGCAgUGAG-UGCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 227410 | 0.66 | 0.944519 |
Target: 5'- -cCG-CCCGGACCUacucUCGCgCGCGGGc -3' miRNA: 3'- guGCaGGGUCUGGGc---AGUGaGUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 222569 | 0.66 | 0.944519 |
Target: 5'- -cCGUCCCGccgcGGCCCGcCG-UCGCGGa -3' miRNA: 3'- guGCAGGGU----CUGGGCaGUgAGUGCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 210466 | 0.66 | 0.944519 |
Target: 5'- uGCGUCCC-GAUCUGUCuCUCGaGGa -3' miRNA: 3'- gUGCAGGGuCUGGGCAGuGAGUgCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 199561 | 0.66 | 0.944519 |
Target: 5'- gCGCGUCgaugaaCAGACUCGUgcggUAC-CGCGGGu -3' miRNA: 3'- -GUGCAGg-----GUCUGGGCA----GUGaGUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 119076 | 0.66 | 0.944519 |
Target: 5'- -cUGUCCCucGACCgGUCGCgcgaggaggUGCGGGc -3' miRNA: 3'- guGCAGGGu-CUGGgCAGUGa--------GUGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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