miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 5' -57.6 NC_002512.2 + 14277 0.68 0.856688
Target:  5'- cCACGcugCCgCAGACCCGgacgaCGCUguccuccCACGGGu -3'
miRNA:   3'- -GUGCa--GG-GUCUGGGCa----GUGA-------GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 178833 0.68 0.850015
Target:  5'- aGCcUUCCGGGCCCGagcUCucUUCACGGGg -3'
miRNA:   3'- gUGcAGGGUCUGGGC---AGu-GAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 116670 0.68 0.850015
Target:  5'- -cCGUCUCcccgggcgaGGACCCGgcuccCGCUCGCGGa -3'
miRNA:   3'- guGCAGGG---------UCUGGGCa----GUGAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 3411 0.69 0.842432
Target:  5'- aGCG-CCCGGGcCCCGgccuccuccCGcCUCGCGGGg -3'
miRNA:   3'- gUGCaGGGUCU-GGGCa--------GU-GAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 138955 0.69 0.826758
Target:  5'- gCACGcCCCGGucgcGCCCGUCAg-CAUGGa -3'
miRNA:   3'- -GUGCaGGGUC----UGGGCAGUgaGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 43230 0.69 0.810449
Target:  5'- gACGUCCUcccggagcuGGGCCCaGUgGCcCGCGGGc -3'
miRNA:   3'- gUGCAGGG---------UCUGGG-CAgUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 142205 0.69 0.802074
Target:  5'- gCGCGUCCCGucggucucGACgUCGUCGCcuUCGCGGa -3'
miRNA:   3'- -GUGCAGGGU--------CUG-GGCAGUG--AGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 91989 0.7 0.793561
Target:  5'- cCGCGUCCgGGucucCCgCGUCgccggcggcggACUCGCGGGc -3'
miRNA:   3'- -GUGCAGGgUCu---GG-GCAG-----------UGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 127547 0.7 0.767269
Target:  5'- gACG-CCCGGACCCG--GCUCGucgucCGGGa -3'
miRNA:   3'- gUGCaGGGUCUGGGCagUGAGU-----GCCC- -5'
9037 5' -57.6 NC_002512.2 + 72852 0.7 0.767269
Target:  5'- cCGgGUCCUcgcuccGGGCCgCGUCGCcguugUCGCGGGg -3'
miRNA:   3'- -GUgCAGGG------UCUGG-GCAGUG-----AGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 53091 0.7 0.776151
Target:  5'- gACG-CCCAgGACCCGU---UCGCGGGc -3'
miRNA:   3'- gUGCaGGGU-CUGGGCAgugAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 8038 0.7 0.784918
Target:  5'- gAgGUCCCGGuCCCGagGCgccccCGCGGGu -3'
miRNA:   3'- gUgCAGGGUCuGGGCagUGa----GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 113994 0.7 0.784918
Target:  5'- cCAgGUCCCGGAUCCGgUugUCgucguccgGCGGGc -3'
miRNA:   3'- -GUgCAGGGUCUGGGCaGugAG--------UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 37020 0.7 0.793561
Target:  5'- uGCGUCCCcggGGACCacuGUCACU--CGGGu -3'
miRNA:   3'- gUGCAGGG---UCUGGg--CAGUGAguGCCC- -5'
9037 5' -57.6 NC_002512.2 + 102352 0.7 0.793561
Target:  5'- gCGCGUCCUcGGCCUG-CAgUCuCGGGa -3'
miRNA:   3'- -GUGCAGGGuCUGGGCaGUgAGuGCCC- -5'
9037 5' -57.6 NC_002512.2 + 150795 1.09 0.003984
Target:  5'- uCACGUCCCAGACCCGUCACUCACGGGu -3'
miRNA:   3'- -GUGCAGGGUCUGGGCAGUGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 222569 0.66 0.944519
Target:  5'- -cCGUCCCGccgcGGCCCGcCG-UCGCGGa -3'
miRNA:   3'- guGCAGGGU----CUGGGCaGUgAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 210466 0.66 0.944519
Target:  5'- uGCGUCCC-GAUCUGUCuCUCGaGGa -3'
miRNA:   3'- gUGCAGGGuCUGGGCAGuGAGUgCCc -5'
9037 5' -57.6 NC_002512.2 + 199561 0.66 0.944519
Target:  5'- gCGCGUCgaugaaCAGACUCGUgcggUAC-CGCGGGu -3'
miRNA:   3'- -GUGCAGg-----GUCUGGGCA----GUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 119076 0.66 0.944519
Target:  5'- -cUGUCCCucGACCgGUCGCgcgaggaggUGCGGGc -3'
miRNA:   3'- guGCAGGGu-CUGGgCAGUGa--------GUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.