Results 41 - 60 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 5878 | 0.72 | 0.672843 |
Target: 5'- gGCGUCgUCcGACUCGUCGCUCguggacgGCGGGg -3' miRNA: 3'- gUGCAG-GGuCUGGGCAGUGAG-------UGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 27700 | 0.72 | 0.673806 |
Target: 5'- gGCGaUCCGGAacgcgcguucuCCCGUCACgacCACGGGa -3' miRNA: 3'- gUGCaGGGUCU-----------GGGCAGUGa--GUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 10331 | 0.72 | 0.69012 |
Target: 5'- aCACGUCCCcggcgaAGACCCGUCcggugggcacgccgACgaagACGGGg -3' miRNA: 3'- -GUGCAGGG------UCUGGGCAG--------------UGag--UGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 18127 | 0.71 | 0.740006 |
Target: 5'- cCACGUCCucccgCAGcGCCCGggcCGCgUCGCGGGc -3' miRNA: 3'- -GUGCAGG-----GUC-UGGGCa--GUG-AGUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 55258 | 0.71 | 0.748274 |
Target: 5'- gACGaCCCGGACUucaacagCGUgaucCGCUCGCGGGa -3' miRNA: 3'- gUGCaGGGUCUGG-------GCA----GUGAGUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 4138 | 0.71 | 0.749189 |
Target: 5'- cCAUGUCCCGGccgcGCCCcgacugagcgaGUCgccgcgGCUCGCGGGc -3' miRNA: 3'- -GUGCAGGGUC----UGGG-----------CAG------UGAGUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 45099 | 0.71 | 0.749189 |
Target: 5'- cCGCGgaggCCCGGGCCaCGUC-CUCG-GGGu -3' miRNA: 3'- -GUGCa---GGGUCUGG-GCAGuGAGUgCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 16542 | 0.7 | 0.758278 |
Target: 5'- gGCGUCCCccuGGCuCCGgaugUACUCGuCGGGc -3' miRNA: 3'- gUGCAGGGu--CUG-GGCa---GUGAGU-GCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 105102 | 0.7 | 0.758278 |
Target: 5'- gCugGaCCCGGACCCGggACUgCGCGGu -3' miRNA: 3'- -GugCaGGGUCUGGGCagUGA-GUGCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 40515 | 0.7 | 0.767269 |
Target: 5'- gACGUCUCAcGguacucgacGCCCGUCACUCACa-- -3' miRNA: 3'- gUGCAGGGU-C---------UGGGCAGUGAGUGccc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 127547 | 0.7 | 0.767269 |
Target: 5'- gACG-CCCGGACCCG--GCUCGucgucCGGGa -3' miRNA: 3'- gUGCaGGGUCUGGGCagUGAGU-----GCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 72852 | 0.7 | 0.767269 |
Target: 5'- cCGgGUCCUcgcuccGGGCCgCGUCGCcguugUCGCGGGg -3' miRNA: 3'- -GUgCAGGG------UCUGG-GCAGUG-----AGUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 53091 | 0.7 | 0.776151 |
Target: 5'- gACG-CCCAgGACCCGU---UCGCGGGc -3' miRNA: 3'- gUGCaGGGU-CUGGGCAgugAGUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 8038 | 0.7 | 0.784918 |
Target: 5'- gAgGUCCCGGuCCCGagGCgccccCGCGGGu -3' miRNA: 3'- gUgCAGGGUCuGGGCagUGa----GUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 113994 | 0.7 | 0.784918 |
Target: 5'- cCAgGUCCCGGAUCCGgUugUCgucguccgGCGGGc -3' miRNA: 3'- -GUgCAGGGUCUGGGCaGugAG--------UGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 37020 | 0.7 | 0.793561 |
Target: 5'- uGCGUCCCcggGGACCacuGUCACU--CGGGu -3' miRNA: 3'- gUGCAGGG---UCUGGg--CAGUGAguGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 102352 | 0.7 | 0.793561 |
Target: 5'- gCGCGUCCUcGGCCUG-CAgUCuCGGGa -3' miRNA: 3'- -GUGCAGGGuCUGGGCaGUgAGuGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 91989 | 0.7 | 0.793561 |
Target: 5'- cCGCGUCCgGGucucCCgCGUCgccggcggcggACUCGCGGGc -3' miRNA: 3'- -GUGCAGGgUCu---GG-GCAG-----------UGAGUGCCC- -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 142205 | 0.69 | 0.802074 |
Target: 5'- gCGCGUCCCGucggucucGACgUCGUCGCcuUCGCGGa -3' miRNA: 3'- -GUGCAGGGU--------CUG-GGCAGUG--AGUGCCc -5' |
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9037 | 5' | -57.6 | NC_002512.2 | + | 138955 | 0.69 | 0.826758 |
Target: 5'- gCACGcCCCGGucgcGCCCGUCAg-CAUGGa -3' miRNA: 3'- -GUGCaGGGUC----UGGGCAGUgaGUGCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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