miRNA display CGI


Results 41 - 60 of 155 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 5' -57.6 NC_002512.2 + 155244 0.75 0.483917
Target:  5'- -cCGUCCC--GCCCGUCgcggcgucgacgGCUCGCGGGa -3'
miRNA:   3'- guGCAGGGucUGGGCAG------------UGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 118588 0.78 0.374799
Target:  5'- gCugGUCCCAGACCCcgggcGUCugGC-CGCGGGa -3'
miRNA:   3'- -GugCAGGGUCUGGG-----CAG--UGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 50858 0.78 0.359546
Target:  5'- gACGUCCgCGGACCUGcUACUgGCGGGa -3'
miRNA:   3'- gUGCAGG-GUCUGGGCaGUGAgUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 121937 0.81 0.236717
Target:  5'- gGCgGUCCCGGACCCGcggcgaugauguUCGCUCACGGu -3'
miRNA:   3'- gUG-CAGGGUCUGGGC------------AGUGAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 27952 0.81 0.231338
Target:  5'- cCACGUaCCCGGGCCCGUCGCcgAUGGGc -3'
miRNA:   3'- -GUGCA-GGGUCUGGGCAGUGagUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 55258 0.71 0.748274
Target:  5'- gACGaCCCGGACUucaacagCGUgaucCGCUCGCGGGa -3'
miRNA:   3'- gUGCaGGGUCUGG-------GCA----GUGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 4138 0.71 0.749189
Target:  5'- cCAUGUCCCGGccgcGCCCcgacugagcgaGUCgccgcgGCUCGCGGGc -3'
miRNA:   3'- -GUGCAGGGUC----UGGG-----------CAG------UGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 142205 0.69 0.802074
Target:  5'- gCGCGUCCCGucggucucGACgUCGUCGCcuUCGCGGa -3'
miRNA:   3'- -GUGCAGGGU--------CUG-GGCAGUG--AGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 91989 0.7 0.793561
Target:  5'- cCGCGUCCgGGucucCCgCGUCgccggcggcggACUCGCGGGc -3'
miRNA:   3'- -GUGCAGGgUCu---GG-GCAG-----------UGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 102352 0.7 0.793561
Target:  5'- gCGCGUCCUcGGCCUG-CAgUCuCGGGa -3'
miRNA:   3'- -GUGCAGGGuCUGGGCaGUgAGuGCCC- -5'
9037 5' -57.6 NC_002512.2 + 37020 0.7 0.793561
Target:  5'- uGCGUCCCcggGGACCacuGUCACU--CGGGu -3'
miRNA:   3'- gUGCAGGG---UCUGGg--CAGUGAguGCCC- -5'
9037 5' -57.6 NC_002512.2 + 113994 0.7 0.784918
Target:  5'- cCAgGUCCCGGAUCCGgUugUCgucguccgGCGGGc -3'
miRNA:   3'- -GUgCAGGGUCUGGGCaGugAG--------UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 8038 0.7 0.784918
Target:  5'- gAgGUCCCGGuCCCGagGCgccccCGCGGGu -3'
miRNA:   3'- gUgCAGGGUCuGGGCagUGa----GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 53091 0.7 0.776151
Target:  5'- gACG-CCCAgGACCCGU---UCGCGGGc -3'
miRNA:   3'- gUGCaGGGU-CUGGGCAgugAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 72852 0.7 0.767269
Target:  5'- cCGgGUCCUcgcuccGGGCCgCGUCGCcguugUCGCGGGg -3'
miRNA:   3'- -GUgCAGGG------UCUGG-GCAGUG-----AGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 127547 0.7 0.767269
Target:  5'- gACG-CCCGGACCCG--GCUCGucgucCGGGa -3'
miRNA:   3'- gUGCaGGGUCUGGGCagUGAGU-----GCCC- -5'
9037 5' -57.6 NC_002512.2 + 40515 0.7 0.767269
Target:  5'- gACGUCUCAcGguacucgacGCCCGUCACUCACa-- -3'
miRNA:   3'- gUGCAGGGU-C---------UGGGCAGUGAGUGccc -5'
9037 5' -57.6 NC_002512.2 + 105102 0.7 0.758278
Target:  5'- gCugGaCCCGGACCCGggACUgCGCGGu -3'
miRNA:   3'- -GugCaGGGUCUGGGCagUGA-GUGCCc -5'
9037 5' -57.6 NC_002512.2 + 16542 0.7 0.758278
Target:  5'- gGCGUCCCccuGGCuCCGgaugUACUCGuCGGGc -3'
miRNA:   3'- gUGCAGGGu--CUG-GGCa---GUGAGU-GCCC- -5'
9037 5' -57.6 NC_002512.2 + 45099 0.71 0.749189
Target:  5'- cCGCGgaggCCCGGGCCaCGUC-CUCG-GGGu -3'
miRNA:   3'- -GUGCa---GGGUCUGG-GCAGuGAGUgCCC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.