miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 5' -57.6 NC_002512.2 + 76914 0.69 0.837799
Target:  5'- gCGCGUCCacuuuauaagaagaGGACCC--CGCUCGCGGa -3'
miRNA:   3'- -GUGCAGGg-------------UCUGGGcaGUGAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 77550 0.66 0.925914
Target:  5'- cUACGUCgCGGACggcggGUCGCcCACGGGc -3'
miRNA:   3'- -GUGCAGgGUCUGgg---CAGUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 78878 0.67 0.891615
Target:  5'- uCGCGUCgCCauggagaccgAGACCCGUCAaUCAgCGGu -3'
miRNA:   3'- -GUGCAG-GG----------UCUGGGCAGUgAGU-GCCc -5'
9037 5' -57.6 NC_002512.2 + 80752 0.68 0.885169
Target:  5'- gGCgGUCCCGGGuCCCGggggUC-CUCGCGGc -3'
miRNA:   3'- gUG-CAGGGUCU-GGGC----AGuGAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 83085 0.66 0.944519
Target:  5'- cCAgGUCCCGGGCC--UC-CUC-CGGGu -3'
miRNA:   3'- -GUgCAGGGUCUGGgcAGuGAGuGCCC- -5'
9037 5' -57.6 NC_002512.2 + 83189 0.66 0.940187
Target:  5'- -uCGUCuCCGucGCCCGUcCGCgCGCGGGg -3'
miRNA:   3'- guGCAG-GGUc-UGGGCA-GUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 88446 0.74 0.558095
Target:  5'- gGCGUCCCGGACCa---GCagGCGGGg -3'
miRNA:   3'- gUGCAGGGUCUGGgcagUGagUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 89446 0.68 0.885169
Target:  5'- uCACGU-CCGGGCCCauggaGUCGCaguaGCGGGc -3'
miRNA:   3'- -GUGCAgGGUCUGGG-----CAGUGag--UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 91989 0.7 0.793561
Target:  5'- cCGCGUCCgGGucucCCgCGUCgccggcggcggACUCGCGGGc -3'
miRNA:   3'- -GUGCAGGgUCu---GG-GCAG-----------UGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 92600 0.66 0.930886
Target:  5'- gGCgGUCCCgAGGCCgGUCGCgacgACGGa -3'
miRNA:   3'- gUG-CAGGG-UCUGGgCAGUGag--UGCCc -5'
9037 5' -57.6 NC_002512.2 + 94257 0.66 0.935643
Target:  5'- gGCGaCCCGGACCCccgagaACUCGCuGGc -3'
miRNA:   3'- gUGCaGGGUCUGGGcag---UGAGUGcCC- -5'
9037 5' -57.6 NC_002512.2 + 94620 0.7 0.793561
Target:  5'- gGCGgCCCAGGCCuCGUCgaGCgcggCGCGGa -3'
miRNA:   3'- gUGCaGGGUCUGG-GCAG--UGa---GUGCCc -5'
9037 5' -57.6 NC_002512.2 + 95511 0.73 0.615761
Target:  5'- gACGUCCCGGACCuCGaacaGCUCguggacgguGCGGGu -3'
miRNA:   3'- gUGCAGGGUCUGG-GCag--UGAG---------UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 97432 0.68 0.878523
Target:  5'- gCGCGcucCCCGGACCCGcCGC---CGGGg -3'
miRNA:   3'- -GUGCa--GGGUCUGGGCaGUGaguGCCC- -5'
9037 5' -57.6 NC_002512.2 + 99603 0.77 0.398485
Target:  5'- gCACGUCCCGGGcCCCG-CGCUCgucGCGGu -3'
miRNA:   3'- -GUGCAGGGUCU-GGGCaGUGAG---UGCCc -5'
9037 5' -57.6 NC_002512.2 + 100322 0.72 0.654503
Target:  5'- gACGUCCCGGcGCCuCGggACUgGCGGGc -3'
miRNA:   3'- gUGCAGGGUC-UGG-GCagUGAgUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 100326 0.66 0.930886
Target:  5'- cCACGgccUCCCGGGCCuCGUCgACgccCAauaGGGa -3'
miRNA:   3'- -GUGC---AGGGUCUGG-GCAG-UGa--GUg--CCC- -5'
9037 5' -57.6 NC_002512.2 + 102352 0.7 0.793561
Target:  5'- gCGCGUCCUcGGCCUG-CAgUCuCGGGa -3'
miRNA:   3'- -GUGCAGGGuCUGGGCaGUgAGuGCCC- -5'
9037 5' -57.6 NC_002512.2 + 103491 0.68 0.885169
Target:  5'- gACGgcgCCCGGGgcCCCGggCGCUCuccCGGGc -3'
miRNA:   3'- gUGCa--GGGUCU--GGGCa-GUGAGu--GCCC- -5'
9037 5' -57.6 NC_002512.2 + 104884 0.66 0.940187
Target:  5'- gGCGUCCCuGGCCCcgaugCACUCcgacgcccuGCaGGGc -3'
miRNA:   3'- gUGCAGGGuCUGGGca---GUGAG---------UG-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.