miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 5' -57.6 NC_002512.2 + 37020 0.7 0.793561
Target:  5'- uGCGUCCCcggGGACCacuGUCACU--CGGGu -3'
miRNA:   3'- gUGCAGGG---UCUGGg--CAGUGAguGCCC- -5'
9037 5' -57.6 NC_002512.2 + 39142 0.67 0.920728
Target:  5'- aGCGUCCCGGcCuCCGagAUcagUACGGGg -3'
miRNA:   3'- gUGCAGGGUCuG-GGCagUGa--GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 40515 0.7 0.767269
Target:  5'- gACGUCUCAcGguacucgacGCCCGUCACUCACa-- -3'
miRNA:   3'- gUGCAGGGU-C---------UGGGCAGUGAGUGccc -5'
9037 5' -57.6 NC_002512.2 + 41778 0.69 0.825957
Target:  5'- aGCGUCUguGAuCCCGUCGCcgauugaUC-CGGGu -3'
miRNA:   3'- gUGCAGGguCU-GGGCAGUG-------AGuGCCC- -5'
9037 5' -57.6 NC_002512.2 + 43230 0.69 0.810449
Target:  5'- gACGUCCUcccggagcuGGGCCCaGUgGCcCGCGGGc -3'
miRNA:   3'- gUGCAGGG---------UCUGGG-CAgUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 43530 0.68 0.87168
Target:  5'- gACGUCCCcGGCCCcgaagacgUugUCGCGGa -3'
miRNA:   3'- gUGCAGGGuCUGGGca------GugAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 45099 0.71 0.749189
Target:  5'- cCGCGgaggCCCGGGCCaCGUC-CUCG-GGGu -3'
miRNA:   3'- -GUGCa---GGGUCUGG-GCAGuGAGUgCCC- -5'
9037 5' -57.6 NC_002512.2 + 45390 0.68 0.857421
Target:  5'- aCGCGggCCGGGaCUGUCGCUCguGCGGGc -3'
miRNA:   3'- -GUGCagGGUCUgGGCAGUGAG--UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 49748 0.66 0.937487
Target:  5'- -cCGUCCUGGaccGCCCGaCGCUggacgccaucauggaCACGGGg -3'
miRNA:   3'- guGCAGGGUC---UGGGCaGUGA---------------GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 50858 0.78 0.359546
Target:  5'- gACGUCCgCGGACCUGcUACUgGCGGGa -3'
miRNA:   3'- gUGCAGG-GUCUGGGCaGUGAgUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 52776 0.66 0.930886
Target:  5'- gGCGcaCCCGGACCUccugGUCGCggagacgcaGCGGGg -3'
miRNA:   3'- gUGCa-GGGUCUGGG----CAGUGag-------UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 53091 0.7 0.776151
Target:  5'- gACG-CCCAgGACCCGU---UCGCGGGc -3'
miRNA:   3'- gUGCaGGGU-CUGGGCAgugAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 53221 0.66 0.944519
Target:  5'- --aGUCCCAGGaggCG-CGCUgGCGGGa -3'
miRNA:   3'- gugCAGGGUCUgg-GCaGUGAgUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 55258 0.71 0.748274
Target:  5'- gACGaCCCGGACUucaacagCGUgaucCGCUCGCGGGa -3'
miRNA:   3'- gUGCaGGGUCUGG-------GCA----GUGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 59277 0.66 0.944519
Target:  5'- cCACGUCCguGACgUCGU-GCUCgACGGa -3'
miRNA:   3'- -GUGCAGGguCUG-GGCAgUGAG-UGCCc -5'
9037 5' -57.6 NC_002512.2 + 61103 0.67 0.891615
Target:  5'- aCACcugCCUGGACCUGUCGCcgUACGGc -3'
miRNA:   3'- -GUGca-GGGUCUGGGCAGUGa-GUGCCc -5'
9037 5' -57.6 NC_002512.2 + 63948 0.67 0.90389
Target:  5'- gGCGUCCUucugguAGACCCGaCACaUGCGGu -3'
miRNA:   3'- gUGCAGGG------UCUGGGCaGUGaGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 71721 0.66 0.933766
Target:  5'- cCGCGUCCCgaGGGCCUGgauggugcucaggUAgUCGCGGa -3'
miRNA:   3'- -GUGCAGGG--UCUGGGCa------------GUgAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 72852 0.7 0.767269
Target:  5'- cCGgGUCCUcgcuccGGGCCgCGUCGCcguugUCGCGGGg -3'
miRNA:   3'- -GUgCAGGG------UCUGG-GCAGUG-----AGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 74435 0.66 0.930886
Target:  5'- gACgGUCCCGG-CgCGUCGCUCACc-- -3'
miRNA:   3'- gUG-CAGGGUCuGgGCAGUGAGUGccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.