miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 5' -57.6 NC_002512.2 + 3411 0.69 0.842432
Target:  5'- aGCG-CCCGGGcCCCGgccuccuccCGcCUCGCGGGg -3'
miRNA:   3'- gUGCaGGGUCU-GGGCa--------GU-GAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 3693 0.67 0.897856
Target:  5'- -cCGUCCCcgacggaggucGACCCgGUCGCUCccCGGGu -3'
miRNA:   3'- guGCAGGGu----------CUGGG-CAGUGAGu-GCCC- -5'
9037 5' -57.6 NC_002512.2 + 4138 0.71 0.749189
Target:  5'- cCAUGUCCCGGccgcGCCCcgacugagcgaGUCgccgcgGCUCGCGGGc -3'
miRNA:   3'- -GUGCAGGGUC----UGGG-----------CAG------UGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 5878 0.72 0.672843
Target:  5'- gGCGUCgUCcGACUCGUCGCUCguggacgGCGGGg -3'
miRNA:   3'- gUGCAG-GGuCUGGGCAGUGAG-------UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 8038 0.7 0.784918
Target:  5'- gAgGUCCCGGuCCCGagGCgccccCGCGGGu -3'
miRNA:   3'- gUgCAGGGUCuGGGCagUGa----GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 9755 0.67 0.897242
Target:  5'- gGCGgagCCGGACCCGcCgccccgcguggcgGCUCACGGa -3'
miRNA:   3'- gUGCag-GGUCUGGGCaG-------------UGAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 10331 0.72 0.69012
Target:  5'- aCACGUCCCcggcgaAGACCCGUCcggugggcacgccgACgaagACGGGg -3'
miRNA:   3'- -GUGCAGGG------UCUGGGCAG--------------UGag--UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 11142 0.66 0.944519
Target:  5'- --aGUCCgAGGgCCGgacacgCGCUCgACGGGu -3'
miRNA:   3'- gugCAGGgUCUgGGCa-----GUGAG-UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 14277 0.68 0.856688
Target:  5'- cCACGcugCCgCAGACCCGgacgaCGCUguccuccCACGGGu -3'
miRNA:   3'- -GUGCa--GG-GUCUGGGCa----GUGA-------GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 16542 0.7 0.758278
Target:  5'- gGCGUCCCccuGGCuCCGgaugUACUCGuCGGGc -3'
miRNA:   3'- gUGCAGGGu--CUG-GGCa---GUGAGU-GCCC- -5'
9037 5' -57.6 NC_002512.2 + 18127 0.71 0.740006
Target:  5'- cCACGUCCucccgCAGcGCCCGggcCGCgUCGCGGGc -3'
miRNA:   3'- -GUGCAGG-----GUC-UGGGCa--GUG-AGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 18561 0.67 0.90389
Target:  5'- aGCG-CCCGGGCCCGgacCGC-CACGa- -3'
miRNA:   3'- gUGCaGGGUCUGGGCa--GUGaGUGCcc -5'
9037 5' -57.6 NC_002512.2 + 21302 0.67 0.897856
Target:  5'- -uCGUCCCGGACCCGcugCGCgUCGagcuCGGc -3'
miRNA:   3'- guGCAGGGUCUGGGCa--GUG-AGU----GCCc -5'
9037 5' -57.6 NC_002512.2 + 24676 0.67 0.915328
Target:  5'- -cCGUCCCGGGCC----GCUCggGCGGGg -3'
miRNA:   3'- guGCAGGGUCUGGgcagUGAG--UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 24901 0.67 0.90389
Target:  5'- cCGCcUUCCGGucCCCGUCGCcCGCGGc -3'
miRNA:   3'- -GUGcAGGGUCu-GGGCAGUGaGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 25007 0.66 0.925914
Target:  5'- -cCGUCCgAGAgcuCgCCGUCGgUCGCGGa -3'
miRNA:   3'- guGCAGGgUCU---G-GGCAGUgAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 25130 0.66 0.930886
Target:  5'- cCGCGcCCCAGGCCgGgaUCGCUgAgcaccCGGGu -3'
miRNA:   3'- -GUGCaGGGUCUGGgC--AGUGAgU-----GCCC- -5'
9037 5' -57.6 NC_002512.2 + 27700 0.72 0.673806
Target:  5'- gGCGaUCCGGAacgcgcguucuCCCGUCACgacCACGGGa -3'
miRNA:   3'- gUGCaGGGUCU-----------GGGCAGUGa--GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 27952 0.81 0.231338
Target:  5'- cCACGUaCCCGGGCCCGUCGCcgAUGGGc -3'
miRNA:   3'- -GUGCA-GGGUCUGGGCAGUGagUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 31873 0.67 0.891615
Target:  5'- gCGCGUCCCucgccCCCGUCcgucgcccGCUCGCGa- -3'
miRNA:   3'- -GUGCAGGGucu--GGGCAG--------UGAGUGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.