miRNA display CGI


Results 1 - 20 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 5' -57.6 NC_002512.2 + 227410 0.66 0.944519
Target:  5'- -cCG-CCCGGACCUacucUCGCgCGCGGGc -3'
miRNA:   3'- guGCaGGGUCUGGGc---AGUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 226472 0.66 0.925914
Target:  5'- gGCGggaggaggCCgGGGCCCGggCGCUCcccucgccGCGGGu -3'
miRNA:   3'- gUGCa-------GGgUCUGGGCa-GUGAG--------UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 226398 0.75 0.53074
Target:  5'- gACGgcgCCgGGACCCGUCGCguccgcgucuccggaCGCGGGa -3'
miRNA:   3'- gUGCa--GGgUCUGGGCAGUGa--------------GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 225704 0.68 0.862497
Target:  5'- gGCGUCCuCAGgaugugucGCCCGcgagccgcggcgacUCGCUCAguCGGGg -3'
miRNA:   3'- gUGCAGG-GUC--------UGGGC--------------AGUGAGU--GCCC- -5'
9037 5' -57.6 NC_002512.2 + 225515 0.66 0.940187
Target:  5'- gGgGUCCCGGGCU--UCGCggACGGGa -3'
miRNA:   3'- gUgCAGGGUCUGGgcAGUGagUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 223223 0.67 0.897856
Target:  5'- gCGCGUCCCGGccgGCUCGgugCACUUcgacuccuCGGGc -3'
miRNA:   3'- -GUGCAGGGUC---UGGGCa--GUGAGu-------GCCC- -5'
9037 5' -57.6 NC_002512.2 + 222569 0.66 0.944519
Target:  5'- -cCGUCCCGccgcGGCCCGcCG-UCGCGGa -3'
miRNA:   3'- guGCAGGGU----CUGGGCaGUgAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 220397 0.7 0.784918
Target:  5'- -cCGUCgUcuACCCGcCGCUCGCGGGc -3'
miRNA:   3'- guGCAGgGucUGGGCaGUGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 220112 0.69 0.81868
Target:  5'- gGCGUCCguGAgCCGcCAC--GCGGGg -3'
miRNA:   3'- gUGCAGGguCUgGGCaGUGagUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 218459 0.67 0.891615
Target:  5'- gGCGUCCCcgcGGACCgCGgUCAuCUCcucgucccGCGGGu -3'
miRNA:   3'- gUGCAGGG---UCUGG-GC-AGU-GAG--------UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 218041 0.74 0.539181
Target:  5'- cCGCGUCCCuc-CCCGUCGCcgcgUCGuCGGGg -3'
miRNA:   3'- -GUGCAGGGucuGGGCAGUG----AGU-GCCC- -5'
9037 5' -57.6 NC_002512.2 + 217763 0.67 0.915328
Target:  5'- ----cCCCGGGCCCGUCcCcgUCGcCGGGg -3'
miRNA:   3'- gugcaGGGUCUGGGCAGuG--AGU-GCCC- -5'
9037 5' -57.6 NC_002512.2 + 211329 0.67 0.897856
Target:  5'- gGCGgUCCGGGCCCGg-GCgCugGGGg -3'
miRNA:   3'- gUGCaGGGUCUGGGCagUGaGugCCC- -5'
9037 5' -57.6 NC_002512.2 + 210466 0.66 0.944519
Target:  5'- uGCGUCCC-GAUCUGUCuCUCGaGGa -3'
miRNA:   3'- gUGCAGGGuCUGGGCAGuGAGUgCCc -5'
9037 5' -57.6 NC_002512.2 + 208677 0.66 0.930886
Target:  5'- gGCGUCCCgGGGgCCG-CugUCccuggACGGGu -3'
miRNA:   3'- gUGCAGGG-UCUgGGCaGugAG-----UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 208067 0.7 0.793561
Target:  5'- uCGCGcuuUCUCGGGCCCGUCGCUgACu-- -3'
miRNA:   3'- -GUGC---AGGGUCUGGGCAGUGAgUGccc -5'
9037 5' -57.6 NC_002512.2 + 206985 0.69 0.810449
Target:  5'- -cCG-CCCGGgauGCCCGUgGCcCGCGGGg -3'
miRNA:   3'- guGCaGGGUC---UGGGCAgUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 205888 0.73 0.615761
Target:  5'- uCGCGUCgCGGGuCCC--CGCUCGCGGGa -3'
miRNA:   3'- -GUGCAGgGUCU-GGGcaGUGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 205109 0.72 0.692987
Target:  5'- gCGCG-CCCGGACCCGagcgggucuUCGuCUCcgACGGGa -3'
miRNA:   3'- -GUGCaGGGUCUGGGC---------AGU-GAG--UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 203667 0.67 0.915328
Target:  5'- --gGUCCCGucUCCGUCGC-CACGGu -3'
miRNA:   3'- gugCAGGGUcuGGGCAGUGaGUGCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.