miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 5' -57.6 NC_002512.2 + 127547 0.7 0.767269
Target:  5'- gACG-CCCGGACCCG--GCUCGucgucCGGGa -3'
miRNA:   3'- gUGCaGGGUCUGGGCagUGAGU-----GCCC- -5'
9037 5' -57.6 NC_002512.2 + 10331 0.72 0.69012
Target:  5'- aCACGUCCCcggcgaAGACCCGUCcggugggcacgccgACgaagACGGGg -3'
miRNA:   3'- -GUGCAGGG------UCUGGGCAG--------------UGag--UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 18127 0.71 0.740006
Target:  5'- cCACGUCCucccgCAGcGCCCGggcCGCgUCGCGGGc -3'
miRNA:   3'- -GUGCAGG-----GUC-UGGGCa--GUG-AGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 55258 0.71 0.748274
Target:  5'- gACGaCCCGGACUucaacagCGUgaucCGCUCGCGGGa -3'
miRNA:   3'- gUGCaGGGUCUGG-------GCA----GUGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 4138 0.71 0.749189
Target:  5'- cCAUGUCCCGGccgcGCCCcgacugagcgaGUCgccgcgGCUCGCGGGc -3'
miRNA:   3'- -GUGCAGGGUC----UGGG-----------CAG------UGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 45099 0.71 0.749189
Target:  5'- cCGCGgaggCCCGGGCCaCGUC-CUCG-GGGu -3'
miRNA:   3'- -GUGCa---GGGUCUGG-GCAGuGAGUgCCC- -5'
9037 5' -57.6 NC_002512.2 + 16542 0.7 0.758278
Target:  5'- gGCGUCCCccuGGCuCCGgaugUACUCGuCGGGc -3'
miRNA:   3'- gUGCAGGGu--CUG-GGCa---GUGAGU-GCCC- -5'
9037 5' -57.6 NC_002512.2 + 105102 0.7 0.758278
Target:  5'- gCugGaCCCGGACCCGggACUgCGCGGu -3'
miRNA:   3'- -GugCaGGGUCUGGGCagUGA-GUGCCc -5'
9037 5' -57.6 NC_002512.2 + 40515 0.7 0.767269
Target:  5'- gACGUCUCAcGguacucgacGCCCGUCACUCACa-- -3'
miRNA:   3'- gUGCAGGGU-C---------UGGGCAGUGAGUGccc -5'
9037 5' -57.6 NC_002512.2 + 27700 0.72 0.673806
Target:  5'- gGCGaUCCGGAacgcgcguucuCCCGUCACgacCACGGGa -3'
miRNA:   3'- gUGCaGGGUCU-----------GGGCAGUGa--GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 5878 0.72 0.672843
Target:  5'- gGCGUCgUCcGACUCGUCGCUCguggacgGCGGGg -3'
miRNA:   3'- gUGCAG-GGuCUGGGCAGUGAG-------UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 188360 0.72 0.654503
Target:  5'- cCGCGUCgCgAGACCCGagUUGCcgCACGGGa -3'
miRNA:   3'- -GUGCAG-GgUCUGGGC--AGUGa-GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 27952 0.81 0.231338
Target:  5'- cCACGUaCCCGGGCCCGUCGCcgAUGGGc -3'
miRNA:   3'- -GUGCA-GGGUCUGGGCAGUGagUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 121937 0.81 0.236717
Target:  5'- gGCgGUCCCGGACCCGcggcgaugauguUCGCUCACGGu -3'
miRNA:   3'- gUG-CAGGGUCUGGGC------------AGUGAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 50858 0.78 0.359546
Target:  5'- gACGUCCgCGGACCUGcUACUgGCGGGa -3'
miRNA:   3'- gUGCAGG-GUCUGGGCaGUGAgUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 118588 0.78 0.374799
Target:  5'- gCugGUCCCAGACCCcgggcGUCugGC-CGCGGGa -3'
miRNA:   3'- -GugCAGGGUCUGGG-----CAG--UGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 155244 0.75 0.483917
Target:  5'- -cCGUCCC--GCCCGUCgcggcgucgacgGCUCGCGGGa -3'
miRNA:   3'- guGCAGGGucUGGGCAG------------UGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 127041 0.75 0.52049
Target:  5'- aGCGUgCCCGucuGGCCCGUCucCUCGCGGa -3'
miRNA:   3'- gUGCA-GGGU---CUGGGCAGu-GAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 152474 0.73 0.615761
Target:  5'- gGCGUCCCGGGuCCUGUgacgcgacggCGC-CACGGGu -3'
miRNA:   3'- gUGCAGGGUCU-GGGCA----------GUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 100322 0.72 0.654503
Target:  5'- gACGUCCCGGcGCCuCGggACUgGCGGGc -3'
miRNA:   3'- gUGCAGGGUC-UGG-GCagUGAgUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.