Results 1 - 20 of 155 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 150795 | 1.09 | 0.003984 |
Target: 5'- uCACGUCCCAGACCCGUCACUCACGGGu -3' miRNA: 3'- -GUGCAGGGUCUGGGCAGUGAGUGCCC- -5' |
|||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 126434 | 0.82 | 0.220889 |
Target: 5'- cCGCGUCCuCGGACCCG-CGCUCGgacCGGGa -3' miRNA: 3'- -GUGCAGG-GUCUGGGCaGUGAGU---GCCC- -5' |
|||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 27952 | 0.81 | 0.231338 |
Target: 5'- cCACGUaCCCGGGCCCGUCGCcgAUGGGc -3' miRNA: 3'- -GUGCA-GGGUCUGGGCAGUGagUGCCC- -5' |
|||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 121937 | 0.81 | 0.236717 |
Target: 5'- gGCgGUCCCGGACCCGcggcgaugauguUCGCUCACGGu -3' miRNA: 3'- gUG-CAGGGUCUGGGC------------AGUGAGUGCCc -5' |
|||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 50858 | 0.78 | 0.359546 |
Target: 5'- gACGUCCgCGGACCUGcUACUgGCGGGa -3' miRNA: 3'- gUGCAGG-GUCUGGGCaGUGAgUGCCC- -5' |
|||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 118588 | 0.78 | 0.374799 |
Target: 5'- gCugGUCCCAGACCCcgggcGUCugGC-CGCGGGa -3' miRNA: 3'- -GugCAGGGUCUGGG-----CAG--UGaGUGCCC- -5' |
|||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 99603 | 0.77 | 0.398485 |
Target: 5'- gCACGUCCCGGGcCCCG-CGCUCgucGCGGu -3' miRNA: 3'- -GUGCAGGGUCU-GGGCaGUGAG---UGCCc -5' |
|||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 192080 | 0.77 | 0.420606 |
Target: 5'- aCGCGUCCCuGACCCagagcgagggcggcGUCAUguucCACGGGa -3' miRNA: 3'- -GUGCAGGGuCUGGG--------------CAGUGa---GUGCCC- -5' |
|||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 150752 | 0.76 | 0.448623 |
Target: 5'- gCGCGgCCCAGACCCGUgAUUgACGGc -3' miRNA: 3'- -GUGCaGGGUCUGGGCAgUGAgUGCCc -5' |
|||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 155244 | 0.75 | 0.483917 |
Target: 5'- -cCGUCCC--GCCCGUCgcggcgucgacgGCUCGCGGGa -3' miRNA: 3'- guGCAGGGucUGGGCAG------------UGAGUGCCC- -5' |
|||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 127041 | 0.75 | 0.52049 |
Target: 5'- aGCGUgCCCGucuGGCCCGUCucCUCGCGGa -3' miRNA: 3'- gUGCA-GGGU---CUGGGCAGu-GAGUGCCc -5' |
|||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 226398 | 0.75 | 0.53074 |
Target: 5'- gACGgcgCCgGGACCCGUCGCguccgcgucuccggaCGCGGGa -3' miRNA: 3'- gUGCa--GGgUCUGGGCAGUGa--------------GUGCCC- -5' |
|||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 218041 | 0.74 | 0.539181 |
Target: 5'- cCGCGUCCCuc-CCCGUCGCcgcgUCGuCGGGg -3' miRNA: 3'- -GUGCAGGGucuGGGCAGUG----AGU-GCCC- -5' |
|||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 88446 | 0.74 | 0.558095 |
Target: 5'- gGCGUCCCGGACCa---GCagGCGGGg -3' miRNA: 3'- gUGCAGGGUCUGGgcagUGagUGCCC- -5' |
|||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 190935 | 0.74 | 0.567623 |
Target: 5'- aGCGgaaCCAGACCCGggCGCaCGCGGGc -3' miRNA: 3'- gUGCag-GGUCUGGGCa-GUGaGUGCCC- -5' |
|||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 95511 | 0.73 | 0.615761 |
Target: 5'- gACGUCCCGGACCuCGaacaGCUCguggacgguGCGGGu -3' miRNA: 3'- gUGCAGGGUCUGG-GCag--UGAG---------UGCCC- -5' |
|||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 205888 | 0.73 | 0.615761 |
Target: 5'- uCGCGUCgCGGGuCCC--CGCUCGCGGGa -3' miRNA: 3'- -GUGCAGgGUCU-GGGcaGUGAGUGCCC- -5' |
|||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 152474 | 0.73 | 0.615761 |
Target: 5'- gGCGUCCCGGGuCCUGUgacgcgacggCGC-CACGGGu -3' miRNA: 3'- gUGCAGGGUCU-GGGCA----------GUGaGUGCCC- -5' |
|||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 188360 | 0.72 | 0.654503 |
Target: 5'- cCGCGUCgCgAGACCCGagUUGCcgCACGGGa -3' miRNA: 3'- -GUGCAG-GgUCUGGGC--AGUGa-GUGCCC- -5' |
|||||||
9037 | 5' | -57.6 | NC_002512.2 | + | 100322 | 0.72 | 0.654503 |
Target: 5'- gACGUCCCGGcGCCuCGggACUgGCGGGc -3' miRNA: 3'- gUGCAGGGUC-UGG-GCagUGAgUGCCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home