miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 5' -57.6 NC_002512.2 + 150795 1.09 0.003984
Target:  5'- uCACGUCCCAGACCCGUCACUCACGGGu -3'
miRNA:   3'- -GUGCAGGGUCUGGGCAGUGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 126434 0.82 0.220889
Target:  5'- cCGCGUCCuCGGACCCG-CGCUCGgacCGGGa -3'
miRNA:   3'- -GUGCAGG-GUCUGGGCaGUGAGU---GCCC- -5'
9037 5' -57.6 NC_002512.2 + 27952 0.81 0.231338
Target:  5'- cCACGUaCCCGGGCCCGUCGCcgAUGGGc -3'
miRNA:   3'- -GUGCA-GGGUCUGGGCAGUGagUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 121937 0.81 0.236717
Target:  5'- gGCgGUCCCGGACCCGcggcgaugauguUCGCUCACGGu -3'
miRNA:   3'- gUG-CAGGGUCUGGGC------------AGUGAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 50858 0.78 0.359546
Target:  5'- gACGUCCgCGGACCUGcUACUgGCGGGa -3'
miRNA:   3'- gUGCAGG-GUCUGGGCaGUGAgUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 118588 0.78 0.374799
Target:  5'- gCugGUCCCAGACCCcgggcGUCugGC-CGCGGGa -3'
miRNA:   3'- -GugCAGGGUCUGGG-----CAG--UGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 99603 0.77 0.398485
Target:  5'- gCACGUCCCGGGcCCCG-CGCUCgucGCGGu -3'
miRNA:   3'- -GUGCAGGGUCU-GGGCaGUGAG---UGCCc -5'
9037 5' -57.6 NC_002512.2 + 192080 0.77 0.420606
Target:  5'- aCGCGUCCCuGACCCagagcgagggcggcGUCAUguucCACGGGa -3'
miRNA:   3'- -GUGCAGGGuCUGGG--------------CAGUGa---GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 150752 0.76 0.448623
Target:  5'- gCGCGgCCCAGACCCGUgAUUgACGGc -3'
miRNA:   3'- -GUGCaGGGUCUGGGCAgUGAgUGCCc -5'
9037 5' -57.6 NC_002512.2 + 155244 0.75 0.483917
Target:  5'- -cCGUCCC--GCCCGUCgcggcgucgacgGCUCGCGGGa -3'
miRNA:   3'- guGCAGGGucUGGGCAG------------UGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 127041 0.75 0.52049
Target:  5'- aGCGUgCCCGucuGGCCCGUCucCUCGCGGa -3'
miRNA:   3'- gUGCA-GGGU---CUGGGCAGu-GAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 226398 0.75 0.53074
Target:  5'- gACGgcgCCgGGACCCGUCGCguccgcgucuccggaCGCGGGa -3'
miRNA:   3'- gUGCa--GGgUCUGGGCAGUGa--------------GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 218041 0.74 0.539181
Target:  5'- cCGCGUCCCuc-CCCGUCGCcgcgUCGuCGGGg -3'
miRNA:   3'- -GUGCAGGGucuGGGCAGUG----AGU-GCCC- -5'
9037 5' -57.6 NC_002512.2 + 88446 0.74 0.558095
Target:  5'- gGCGUCCCGGACCa---GCagGCGGGg -3'
miRNA:   3'- gUGCAGGGUCUGGgcagUGagUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 190935 0.74 0.567623
Target:  5'- aGCGgaaCCAGACCCGggCGCaCGCGGGc -3'
miRNA:   3'- gUGCag-GGUCUGGGCa-GUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 95511 0.73 0.615761
Target:  5'- gACGUCCCGGACCuCGaacaGCUCguggacgguGCGGGu -3'
miRNA:   3'- gUGCAGGGUCUGG-GCag--UGAG---------UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 205888 0.73 0.615761
Target:  5'- uCGCGUCgCGGGuCCC--CGCUCGCGGGa -3'
miRNA:   3'- -GUGCAGgGUCU-GGGcaGUGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 152474 0.73 0.615761
Target:  5'- gGCGUCCCGGGuCCUGUgacgcgacggCGC-CACGGGu -3'
miRNA:   3'- gUGCAGGGUCU-GGGCA----------GUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 188360 0.72 0.654503
Target:  5'- cCGCGUCgCgAGACCCGagUUGCcgCACGGGa -3'
miRNA:   3'- -GUGCAG-GgUCUGGGC--AGUGa-GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 100322 0.72 0.654503
Target:  5'- gACGUCCCGGcGCCuCGggACUgGCGGGc -3'
miRNA:   3'- gUGCAGGGUC-UGG-GCagUGAgUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.