miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 5' -57.6 NC_002512.2 + 114159 0.66 0.944519
Target:  5'- gACGaCCCGGGCCCgGUC-CUCcuCGGu -3'
miRNA:   3'- gUGCaGGGUCUGGG-CAGuGAGu-GCCc -5'
9037 5' -57.6 NC_002512.2 + 119076 0.66 0.944519
Target:  5'- -cUGUCCCucGACCgGUCGCgcgaggaggUGCGGGc -3'
miRNA:   3'- guGCAGGGu-CUGGgCAGUGa--------GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 11142 0.66 0.944519
Target:  5'- --aGUCCgAGGgCCGgacacgCGCUCgACGGGu -3'
miRNA:   3'- gugCAGGgUCUgGGCa-----GUGAG-UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 199561 0.66 0.944519
Target:  5'- gCGCGUCgaugaaCAGACUCGUgcggUAC-CGCGGGu -3'
miRNA:   3'- -GUGCAGg-----GUCUGGGCA----GUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 53221 0.66 0.944519
Target:  5'- --aGUCCCAGGaggCG-CGCUgGCGGGa -3'
miRNA:   3'- gugCAGGGUCUgg-GCaGUGAgUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 123890 0.66 0.944519
Target:  5'- gCugGgccgaCguGAUCCGUUACUCgaGCGGGa -3'
miRNA:   3'- -GugCag---GguCUGGGCAGUGAG--UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 83085 0.66 0.944519
Target:  5'- cCAgGUCCCGGGCC--UC-CUC-CGGGu -3'
miRNA:   3'- -GUgCAGGGUCUGGgcAGuGAGuGCCC- -5'
9037 5' -57.6 NC_002512.2 + 227410 0.66 0.944519
Target:  5'- -cCG-CCCGGACCUacucUCGCgCGCGGGc -3'
miRNA:   3'- guGCaGGGUCUGGGc---AGUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 59277 0.66 0.944519
Target:  5'- cCACGUCCguGACgUCGU-GCUCgACGGa -3'
miRNA:   3'- -GUGCAGGguCUG-GGCAgUGAG-UGCCc -5'
9037 5' -57.6 NC_002512.2 + 222569 0.66 0.944519
Target:  5'- -cCGUCCCGccgcGGCCCGcCG-UCGCGGa -3'
miRNA:   3'- guGCAGGGU----CUGGGCaGUgAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 210466 0.66 0.944519
Target:  5'- uGCGUCCC-GAUCUGUCuCUCGaGGa -3'
miRNA:   3'- gUGCAGGGuCUGGGCAGuGAGUgCCc -5'
9037 5' -57.6 NC_002512.2 + 153510 0.66 0.943242
Target:  5'- cCGgGUUCCGGACCgguucacggcugcaUGUCGCUCGacaucuucucCGGGa -3'
miRNA:   3'- -GUgCAGGGUCUGG--------------GCAGUGAGU----------GCCC- -5'
9037 5' -57.6 NC_002512.2 + 152554 0.66 0.941945
Target:  5'- aACGcCCCGGGucaggagcccgagacCCCGUCGcCUCGCGa- -3'
miRNA:   3'- gUGCaGGGUCU---------------GGGCAGU-GAGUGCcc -5'
9037 5' -57.6 NC_002512.2 + 225515 0.66 0.940187
Target:  5'- gGgGUCCCGGGCU--UCGCggACGGGa -3'
miRNA:   3'- gUgCAGGGUCUGGgcAGUGagUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 150394 0.66 0.940187
Target:  5'- gGCGUCCCcccucCCCGaacCGCcCACGGGc -3'
miRNA:   3'- gUGCAGGGucu--GGGCa--GUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 136163 0.66 0.940187
Target:  5'- -cCGUCCCcgucGAUCCGcCGCgcgGCGGGg -3'
miRNA:   3'- guGCAGGGu---CUGGGCaGUGag-UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 83189 0.66 0.940187
Target:  5'- -uCGUCuCCGucGCCCGUcCGCgCGCGGGg -3'
miRNA:   3'- guGCAG-GGUc-UGGGCA-GUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 109060 0.66 0.940187
Target:  5'- gACGa-CCGGACCCGcCGCgUCcCGGGu -3'
miRNA:   3'- gUGCagGGUCUGGGCaGUG-AGuGCCC- -5'
9037 5' -57.6 NC_002512.2 + 104884 0.66 0.940187
Target:  5'- gGCGUCCCuGGCCCcgaugCACUCcgacgcccuGCaGGGc -3'
miRNA:   3'- gUGCAGGGuCUGGGca---GUGAG---------UG-CCC- -5'
9037 5' -57.6 NC_002512.2 + 49748 0.66 0.937487
Target:  5'- -cCGUCCUGGaccGCCCGaCGCUggacgccaucauggaCACGGGg -3'
miRNA:   3'- guGCAGGGUC---UGGGCaGUGA---------------GUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.