miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 5' -57.6 NC_002512.2 + 94257 0.66 0.935643
Target:  5'- gGCGaCCCGGACCCccgagaACUCGCuGGc -3'
miRNA:   3'- gUGCaGGGUCUGGGcag---UGAGUGcCC- -5'
9037 5' -57.6 NC_002512.2 + 71721 0.66 0.933766
Target:  5'- cCGCGUCCCgaGGGCCUGgauggugcucaggUAgUCGCGGa -3'
miRNA:   3'- -GUGCAGGG--UCUGGGCa------------GUgAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 52776 0.66 0.930886
Target:  5'- gGCGcaCCCGGACCUccugGUCGCggagacgcaGCGGGg -3'
miRNA:   3'- gUGCa-GGGUCUGGG----CAGUGag-------UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 25130 0.66 0.930886
Target:  5'- cCGCGcCCCAGGCCgGgaUCGCUgAgcaccCGGGu -3'
miRNA:   3'- -GUGCaGGGUCUGGgC--AGUGAgU-----GCCC- -5'
9037 5' -57.6 NC_002512.2 + 208677 0.66 0.930886
Target:  5'- gGCGUCCCgGGGgCCG-CugUCccuggACGGGu -3'
miRNA:   3'- gUGCAGGG-UCUgGGCaGugAG-----UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 154988 0.66 0.930886
Target:  5'- cCGCGUCCgucgcgacgaGGAUCCGUCGCccgucgUCcCGGGu -3'
miRNA:   3'- -GUGCAGGg---------UCUGGGCAGUG------AGuGCCC- -5'
9037 5' -57.6 NC_002512.2 + 196861 0.66 0.930886
Target:  5'- cUACGaCCU--GCCCGUCGCUCugccGCGGa -3'
miRNA:   3'- -GUGCaGGGucUGGGCAGUGAG----UGCCc -5'
9037 5' -57.6 NC_002512.2 + 100326 0.66 0.930886
Target:  5'- cCACGgccUCCCGGGCCuCGUCgACgccCAauaGGGa -3'
miRNA:   3'- -GUGC---AGGGUCUGG-GCAG-UGa--GUg--CCC- -5'
9037 5' -57.6 NC_002512.2 + 74435 0.66 0.930886
Target:  5'- gACgGUCCCGG-CgCGUCGCUCACc-- -3'
miRNA:   3'- gUG-CAGGGUCuGgGCAGUGAGUGccc -5'
9037 5' -57.6 NC_002512.2 + 92600 0.66 0.930886
Target:  5'- gGCgGUCCCgAGGCCgGUCGCgacgACGGa -3'
miRNA:   3'- gUG-CAGGG-UCUGGgCAGUGag--UGCCc -5'
9037 5' -57.6 NC_002512.2 + 181657 0.66 0.930886
Target:  5'- cCGCGUCCCGGuACagguaGUCGCgcccCGCGGc -3'
miRNA:   3'- -GUGCAGGGUC-UGgg---CAGUGa---GUGCCc -5'
9037 5' -57.6 NC_002512.2 + 128421 0.66 0.930886
Target:  5'- gGgGUCgCCGGAgCCC-UC-CUCGCGGGc -3'
miRNA:   3'- gUgCAG-GGUCU-GGGcAGuGAGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 137236 0.66 0.925914
Target:  5'- -cCGUCCCGGAUCCG-----CGCGGGu -3'
miRNA:   3'- guGCAGGGUCUGGGCagugaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 150154 0.66 0.925914
Target:  5'- gGCGUCcgCCAG-CCCGUC-CUCGCucucccugccGGGc -3'
miRNA:   3'- gUGCAG--GGUCuGGGCAGuGAGUG----------CCC- -5'
9037 5' -57.6 NC_002512.2 + 112281 0.66 0.925914
Target:  5'- gAUGUCCCGGuucuCCuuCGUCACgauCGGGu -3'
miRNA:   3'- gUGCAGGGUCu---GG--GCAGUGaguGCCC- -5'
9037 5' -57.6 NC_002512.2 + 127637 0.66 0.925914
Target:  5'- gACG-CCCGGACCCGg-GC-C-CGGGu -3'
miRNA:   3'- gUGCaGGGUCUGGGCagUGaGuGCCC- -5'
9037 5' -57.6 NC_002512.2 + 25007 0.66 0.925914
Target:  5'- -cCGUCCgAGAgcuCgCCGUCGgUCGCGGa -3'
miRNA:   3'- guGCAGGgUCU---G-GGCAGUgAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 226472 0.66 0.925914
Target:  5'- gGCGggaggaggCCgGGGCCCGggCGCUCcccucgccGCGGGu -3'
miRNA:   3'- gUGCa-------GGgUCUGGGCa-GUGAG--------UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 122279 0.66 0.925914
Target:  5'- gACGUCCUGGAgCCCGUCAgCgagccgCACGu- -3'
miRNA:   3'- gUGCAGGGUCU-GGGCAGU-Ga-----GUGCcc -5'
9037 5' -57.6 NC_002512.2 + 77550 0.66 0.925914
Target:  5'- cUACGUCgCGGACggcggGUCGCcCACGGGc -3'
miRNA:   3'- -GUGCAGgGUCUGgg---CAGUGaGUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.