miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 5' -57.6 NC_002512.2 + 25007 0.66 0.925914
Target:  5'- -cCGUCCgAGAgcuCgCCGUCGgUCGCGGa -3'
miRNA:   3'- guGCAGGgUCU---G-GGCAGUgAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 108608 0.66 0.925405
Target:  5'- gGCGgCCgCGGGCCCGUCccgucucucguuACUCuccuccaggaccaGCGGGa -3'
miRNA:   3'- gUGCaGG-GUCUGGGCAG------------UGAG-------------UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 195571 0.66 0.923866
Target:  5'- cCGgGUCCCugaaguGGACCgaggggaacgccaGUCACUCGgCGGGg -3'
miRNA:   3'- -GUgCAGGG------UCUGGg------------CAGUGAGU-GCCC- -5'
9037 5' -57.6 NC_002512.2 + 39142 0.67 0.920728
Target:  5'- aGCGUCCCGGcCuCCGagAUcagUACGGGg -3'
miRNA:   3'- gUGCAGGGUCuG-GGCagUGa--GUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 138785 0.67 0.920728
Target:  5'- aGCG-CCaCGGGCCCGUCcucCUCGCGc- -3'
miRNA:   3'- gUGCaGG-GUCUGGGCAGu--GAGUGCcc -5'
9037 5' -57.6 NC_002512.2 + 117887 0.67 0.920728
Target:  5'- gACG-CCgGgGGCCCGUCGCUgcucCACGGc -3'
miRNA:   3'- gUGCaGGgU-CUGGGCAGUGA----GUGCCc -5'
9037 5' -57.6 NC_002512.2 + 106035 0.67 0.920728
Target:  5'- aACG-CUCAuaauCCCGUCGC-CGCGGGc -3'
miRNA:   3'- gUGCaGGGUcu--GGGCAGUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 132897 0.67 0.920728
Target:  5'- gGCGUCCCcggcGACgCGaUACUCucGCGGGc -3'
miRNA:   3'- gUGCAGGGu---CUGgGCaGUGAG--UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 203667 0.67 0.915328
Target:  5'- --gGUCCCGucUCCGUCGC-CACGGu -3'
miRNA:   3'- gugCAGGGUcuGGGCAGUGaGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 217763 0.67 0.915328
Target:  5'- ----cCCCGGGCCCGUCcCcgUCGcCGGGg -3'
miRNA:   3'- gugcaGGGUCUGGGCAGuG--AGU-GCCC- -5'
9037 5' -57.6 NC_002512.2 + 118640 0.67 0.915328
Target:  5'- cCGCGUgCC--GCCCGaCGCUC-CGGGc -3'
miRNA:   3'- -GUGCAgGGucUGGGCaGUGAGuGCCC- -5'
9037 5' -57.6 NC_002512.2 + 24676 0.67 0.915328
Target:  5'- -cCGUCCCGGGCC----GCUCggGCGGGg -3'
miRNA:   3'- guGCAGGGUCUGGgcagUGAG--UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 149657 0.67 0.909715
Target:  5'- gCACGUCCCGGagcuGCCCuaucCGCUC-CGGc -3'
miRNA:   3'- -GUGCAGGGUC----UGGGca--GUGAGuGCCc -5'
9037 5' -57.6 NC_002512.2 + 202028 0.67 0.909715
Target:  5'- cCGgGUCCCccGCCgGUCcgGCUCGCGGu -3'
miRNA:   3'- -GUgCAGGGucUGGgCAG--UGAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 24901 0.67 0.90389
Target:  5'- cCGCcUUCCGGucCCCGUCGCcCGCGGc -3'
miRNA:   3'- -GUGcAGGGUCu-GGGCAGUGaGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 63948 0.67 0.90389
Target:  5'- gGCGUCCUucugguAGACCCGaCACaUGCGGu -3'
miRNA:   3'- gUGCAGGG------UCUGGGCaGUGaGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 18561 0.67 0.90389
Target:  5'- aGCG-CCCGGGCCCGgacCGC-CACGa- -3'
miRNA:   3'- gUGCaGGGUCUGGGCa--GUGaGUGCcc -5'
9037 5' -57.6 NC_002512.2 + 123098 0.67 0.90389
Target:  5'- gACGUcgaCCCcGACCCcgaccaGUCGC-CGCGGGc -3'
miRNA:   3'- gUGCA---GGGuCUGGG------CAGUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 111345 0.67 0.9027
Target:  5'- gGCGUCCCGGGCgCG-CACgaggacgaccCGGGg -3'
miRNA:   3'- gUGCAGGGUCUGgGCaGUGagu-------GCCC- -5'
9037 5' -57.6 NC_002512.2 + 134199 0.67 0.897856
Target:  5'- -cCGUCCCcgccggAGGCCCGgcggacgcgCGCUCACGa- -3'
miRNA:   3'- guGCAGGG------UCUGGGCa--------GUGAGUGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.