miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 5' -57.6 NC_002512.2 + 211329 0.67 0.897856
Target:  5'- gGCGgUCCGGGCCCGg-GCgCugGGGg -3'
miRNA:   3'- gUGCaGGGUCUGGGCagUGaGugCCC- -5'
9037 5' -57.6 NC_002512.2 + 180439 0.67 0.897856
Target:  5'- gGCGcCCCGGgcggcGCCCGUCAUUUcucgACGGc -3'
miRNA:   3'- gUGCaGGGUC-----UGGGCAGUGAG----UGCCc -5'
9037 5' -57.6 NC_002512.2 + 186327 0.67 0.897856
Target:  5'- aACGUCCUcauGGACgCCGUCAUcCGCGa- -3'
miRNA:   3'- gUGCAGGG---UCUG-GGCAGUGaGUGCcc -5'
9037 5' -57.6 NC_002512.2 + 189515 0.67 0.897856
Target:  5'- gACGcUCCGGGCCCGggcUCGC-CGCGGu -3'
miRNA:   3'- gUGCaGGGUCUGGGC---AGUGaGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 134199 0.67 0.897856
Target:  5'- -cCGUCCCcgccggAGGCCCGgcggacgcgCGCUCACGa- -3'
miRNA:   3'- guGCAGGG------UCUGGGCa--------GUGAGUGCcc -5'
9037 5' -57.6 NC_002512.2 + 21302 0.67 0.897856
Target:  5'- -uCGUCCCGGACCCGcugCGCgUCGagcuCGGc -3'
miRNA:   3'- guGCAGGGUCUGGGCa--GUG-AGU----GCCc -5'
9037 5' -57.6 NC_002512.2 + 223223 0.67 0.897856
Target:  5'- gCGCGUCCCGGccgGCUCGgugCACUUcgacuccuCGGGc -3'
miRNA:   3'- -GUGCAGGGUC---UGGGCa--GUGAGu-------GCCC- -5'
9037 5' -57.6 NC_002512.2 + 149129 0.67 0.897856
Target:  5'- cCGCGaggaCCCccgGGACCCGggacCGC-CGCGGGg -3'
miRNA:   3'- -GUGCa---GGG---UCUGGGCa---GUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 111768 0.67 0.897856
Target:  5'- uCACGUCgCCAGGgagcCCCGcugggaCGCcCACGGGu -3'
miRNA:   3'- -GUGCAG-GGUCU----GGGCa-----GUGaGUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 161492 0.67 0.897856
Target:  5'- cCACGUCaaggaGGACCUGgugCGCUgCGCGGa -3'
miRNA:   3'- -GUGCAGgg---UCUGGGCa--GUGA-GUGCCc -5'
9037 5' -57.6 NC_002512.2 + 9755 0.67 0.897242
Target:  5'- gGCGgagCCGGACCCGcCgccccgcguggcgGCUCACGGa -3'
miRNA:   3'- gUGCag-GGUCUGGGCaG-------------UGAGUGCCc -5'
9037 5' -57.6 NC_002512.2 + 31873 0.67 0.891615
Target:  5'- gCGCGUCCCucgccCCCGUCcgucgcccGCUCGCGa- -3'
miRNA:   3'- -GUGCAGGGucu--GGGCAG--------UGAGUGCcc -5'
9037 5' -57.6 NC_002512.2 + 218459 0.67 0.891615
Target:  5'- gGCGUCCCcgcGGACCgCGgUCAuCUCcucgucccGCGGGu -3'
miRNA:   3'- gUGCAGGG---UCUGG-GC-AGU-GAG--------UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 61103 0.67 0.891615
Target:  5'- aCACcugCCUGGACCUGUCGCcgUACGGc -3'
miRNA:   3'- -GUGca-GGGUCUGGGCAGUGa-GUGCCc -5'
9037 5' -57.6 NC_002512.2 + 78878 0.67 0.891615
Target:  5'- uCGCGUCgCCauggagaccgAGACCCGUCAaUCAgCGGu -3'
miRNA:   3'- -GUGCAG-GG----------UCUGGGCAGUgAGU-GCCc -5'
9037 5' -57.6 NC_002512.2 + 106762 0.67 0.891615
Target:  5'- cCGCGUCCgGcucucGGCCCGcggCACUgGuCGGGg -3'
miRNA:   3'- -GUGCAGGgU-----CUGGGCa--GUGAgU-GCCC- -5'
9037 5' -57.6 NC_002512.2 + 120810 0.67 0.891615
Target:  5'- gGCGgucUCUCGGACCCGggaCGCg-GCGGGu -3'
miRNA:   3'- gUGC---AGGGUCUGGGCa--GUGagUGCCC- -5'
9037 5' -57.6 NC_002512.2 + 89446 0.68 0.885169
Target:  5'- uCACGU-CCGGGCCCauggaGUCGCaguaGCGGGc -3'
miRNA:   3'- -GUGCAgGGUCUGGG-----CAGUGag--UGCCC- -5'
9037 5' -57.6 NC_002512.2 + 103491 0.68 0.885169
Target:  5'- gACGgcgCCCGGGgcCCCGggCGCUCuccCGGGc -3'
miRNA:   3'- gUGCa--GGGUCU--GGGCa-GUGAGu--GCCC- -5'
9037 5' -57.6 NC_002512.2 + 80752 0.68 0.885169
Target:  5'- gGCgGUCCCGGGuCCCGggggUC-CUCGCGGc -3'
miRNA:   3'- gUG-CAGGGUCU-GGGC----AGuGAGUGCCc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.